Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3433

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3432 and EX28DRAFT_3433 are separated by 19 nucleotidesEX28DRAFT_3433 and EX28DRAFT_3434 are separated by 77 nucleotidesEX28DRAFT_3434 and EX28DRAFT_3435 overlap by 11 nucleotidesEX28DRAFT_3435 and EX28DRAFT_3436 are separated by 3 nucleotides EX28DRAFT_3432: EX28DRAFT_3432 - 3-carboxymuconate cyclase, at 101,333 to 102,469 _3432 EX28DRAFT_3433: EX28DRAFT_3433 - Transcriptional antiterminator, at 102,489 to 104,399 _3433 EX28DRAFT_3434: EX28DRAFT_3434 - addiction module antitoxin, RelB/DinJ family, at 104,477 to 104,719 _3434 EX28DRAFT_3435: EX28DRAFT_3435 - addiction module toxin, RelE/StbE family, at 104,709 to 104,993 _3435 EX28DRAFT_3436: EX28DRAFT_3436 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 104,997 to 105,461 _3436 Position (kb) 102 103 104 105Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 101.552 kb on + strand, within EX28DRAFT_3432at 101.660 kb on + strand, within EX28DRAFT_3432at 101.691 kb on + strand, within EX28DRAFT_3432at 101.691 kb on + strand, within EX28DRAFT_3432at 101.691 kb on + strand, within EX28DRAFT_3432at 101.692 kb on - strand, within EX28DRAFT_3432at 101.705 kb on + strand, within EX28DRAFT_3432at 101.705 kb on + strand, within EX28DRAFT_3432at 101.705 kb on + strand, within EX28DRAFT_3432at 101.706 kb on - strand, within EX28DRAFT_3432at 101.737 kb on + strand, within EX28DRAFT_3432at 101.894 kb on + strand, within EX28DRAFT_3432at 101.931 kb on - strand, within EX28DRAFT_3432at 102.077 kb on - strand, within EX28DRAFT_3432at 102.091 kb on + strand, within EX28DRAFT_3432at 102.115 kb on - strand, within EX28DRAFT_3432at 102.209 kb on + strand, within EX28DRAFT_3432at 102.209 kb on + strand, within EX28DRAFT_3432at 102.209 kb on + strand, within EX28DRAFT_3432at 102.209 kb on + strand, within EX28DRAFT_3432at 102.210 kb on - strand, within EX28DRAFT_3432at 102.210 kb on - strand, within EX28DRAFT_3432at 102.210 kb on - strand, within EX28DRAFT_3432at 102.210 kb on - strand, within EX28DRAFT_3432at 102.348 kb on - strand, within EX28DRAFT_3432at 102.348 kb on - strand, within EX28DRAFT_3432at 102.426 kb on - strandat 102.468 kb on - strandat 102.474 kb on + strandat 102.474 kb on + strandat 102.474 kb on + strandat 102.512 kb on - strandat 102.605 kb on + strandat 102.651 kb on - strandat 102.651 kb on - strandat 102.741 kb on - strand, within EX28DRAFT_3433at 102.809 kb on + strand, within EX28DRAFT_3433at 103.383 kb on + strand, within EX28DRAFT_3433at 103.383 kb on + strand, within EX28DRAFT_3433at 103.383 kb on + strand, within EX28DRAFT_3433at 103.384 kb on - strand, within EX28DRAFT_3433at 103.384 kb on - strand, within EX28DRAFT_3433at 103.410 kb on + strand, within EX28DRAFT_3433at 103.410 kb on + strand, within EX28DRAFT_3433at 103.413 kb on - strand, within EX28DRAFT_3433at 103.416 kb on + strand, within EX28DRAFT_3433at 103.416 kb on + strand, within EX28DRAFT_3433at 103.416 kb on + strand, within EX28DRAFT_3433at 103.416 kb on + strand, within EX28DRAFT_3433at 103.417 kb on - strand, within EX28DRAFT_3433at 103.417 kb on - strand, within EX28DRAFT_3433at 103.417 kb on - strand, within EX28DRAFT_3433at 103.417 kb on - strand, within EX28DRAFT_3433at 103.417 kb on - strand, within EX28DRAFT_3433at 103.417 kb on - strand, within EX28DRAFT_3433at 103.523 kb on + strand, within EX28DRAFT_3433at 103.557 kb on - strand, within EX28DRAFT_3433at 103.590 kb on + strand, within EX28DRAFT_3433at 103.599 kb on + strand, within EX28DRAFT_3433at 103.600 kb on - strand, within EX28DRAFT_3433at 103.600 kb on - strand, within EX28DRAFT_3433at 103.640 kb on + strand, within EX28DRAFT_3433at 103.641 kb on - strand, within EX28DRAFT_3433at 103.665 kb on + strand, within EX28DRAFT_3433at 103.906 kb on - strand, within EX28DRAFT_3433at 103.967 kb on + strand, within EX28DRAFT_3433at 103.967 kb on + strand, within EX28DRAFT_3433at 103.971 kb on + strand, within EX28DRAFT_3433at 103.971 kb on + strand, within EX28DRAFT_3433at 104.179 kb on + strand, within EX28DRAFT_3433at 104.184 kb on + strand, within EX28DRAFT_3433at 104.184 kb on + strand, within EX28DRAFT_3433at 104.187 kb on - strand, within EX28DRAFT_3433at 104.339 kb on + strandat 104.465 kb on - strandat 104.476 kb on - strandat 104.586 kb on - strand, within EX28DRAFT_3434at 104.630 kb on - strand, within EX28DRAFT_3434at 104.696 kb on - strandat 104.696 kb on - strandat 104.701 kb on + strandat 104.715 kb on + strandat 104.716 kb on - strandat 104.773 kb on + strand, within EX28DRAFT_3435at 104.774 kb on - strand, within EX28DRAFT_3435at 104.785 kb on + strand, within EX28DRAFT_3435at 104.786 kb on - strand, within EX28DRAFT_3435at 104.786 kb on - strand, within EX28DRAFT_3435at 104.926 kb on + strand, within EX28DRAFT_3435at 104.946 kb on - strand, within EX28DRAFT_3435at 104.991 kb on + strandat 104.992 kb on - strandat 104.995 kb on + strandat 105.016 kb on - strandat 105.058 kb on - strand, within EX28DRAFT_3436at 105.140 kb on + strand, within EX28DRAFT_3436at 105.140 kb on + strand, within EX28DRAFT_3436at 105.142 kb on + strand, within EX28DRAFT_3436at 105.142 kb on + strand, within EX28DRAFT_3436at 105.143 kb on - strand, within EX28DRAFT_3436at 105.162 kb on - strand, within EX28DRAFT_3436at 105.162 kb on - strand, within EX28DRAFT_3436at 105.162 kb on - strand, within EX28DRAFT_3436

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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101,552 + EX28DRAFT_3432 0.19 +2.7
101,660 + EX28DRAFT_3432 0.29 +0.2
101,691 + EX28DRAFT_3432 0.31 -0.1
101,691 + EX28DRAFT_3432 0.31 -0.2
101,691 + EX28DRAFT_3432 0.31 -1.1
101,692 - EX28DRAFT_3432 0.32 +0.9
101,705 + EX28DRAFT_3432 0.33 -0.5
101,705 + EX28DRAFT_3432 0.33 +0.6
101,705 + EX28DRAFT_3432 0.33 +0.7
101,706 - EX28DRAFT_3432 0.33 +1.0
101,737 + EX28DRAFT_3432 0.36 +1.5
101,894 + EX28DRAFT_3432 0.49 +0.0
101,931 - EX28DRAFT_3432 0.53 +0.9
102,077 - EX28DRAFT_3432 0.65 +0.2
102,091 + EX28DRAFT_3432 0.67 +0.3
102,115 - EX28DRAFT_3432 0.69 +0.7
102,209 + EX28DRAFT_3432 0.77 -0.6
102,209 + EX28DRAFT_3432 0.77 +0.3
102,209 + EX28DRAFT_3432 0.77 -1.1
102,209 + EX28DRAFT_3432 0.77 +0.2
102,210 - EX28DRAFT_3432 0.77 +0.2
102,210 - EX28DRAFT_3432 0.77 -1.5
102,210 - EX28DRAFT_3432 0.77 -0.5
102,210 - EX28DRAFT_3432 0.77 -0.0
102,348 - EX28DRAFT_3432 0.89 -0.1
102,348 - EX28DRAFT_3432 0.89 +1.6
102,426 - -0.0
102,468 - -0.0
102,474 + -0.9
102,474 + +0.2
102,474 + +0.2
102,512 - +0.0
102,605 + +0.5
102,651 - +0.0
102,651 - -0.0
102,741 - EX28DRAFT_3433 0.13 -0.0
102,809 + EX28DRAFT_3433 0.17 -0.4
103,383 + EX28DRAFT_3433 0.47 -0.3
103,383 + EX28DRAFT_3433 0.47 -0.2
103,383 + EX28DRAFT_3433 0.47 -0.6
103,384 - EX28DRAFT_3433 0.47 -0.2
103,384 - EX28DRAFT_3433 0.47 -0.1
103,410 + EX28DRAFT_3433 0.48 -0.1
103,410 + EX28DRAFT_3433 0.48 +0.2
103,413 - EX28DRAFT_3433 0.48 -0.4
103,416 + EX28DRAFT_3433 0.49 -0.3
103,416 + EX28DRAFT_3433 0.49 -0.1
103,416 + EX28DRAFT_3433 0.49 -0.4
103,416 + EX28DRAFT_3433 0.49 +0.9
103,417 - EX28DRAFT_3433 0.49 -1.9
103,417 - EX28DRAFT_3433 0.49 +0.7
103,417 - EX28DRAFT_3433 0.49 +0.3
103,417 - EX28DRAFT_3433 0.49 -0.4
103,417 - EX28DRAFT_3433 0.49 +1.3
103,417 - EX28DRAFT_3433 0.49 +0.1
103,523 + EX28DRAFT_3433 0.54 -0.4
103,557 - EX28DRAFT_3433 0.56 -1.2
103,590 + EX28DRAFT_3433 0.58 +0.4
103,599 + EX28DRAFT_3433 0.58 -0.2
103,600 - EX28DRAFT_3433 0.58 -0.9
103,600 - EX28DRAFT_3433 0.58 +0.2
103,640 + EX28DRAFT_3433 0.60 -2.0
103,641 - EX28DRAFT_3433 0.60 -0.2
103,665 + EX28DRAFT_3433 0.62 -2.8
103,906 - EX28DRAFT_3433 0.74 +0.3
103,967 + EX28DRAFT_3433 0.77 +2.2
103,967 + EX28DRAFT_3433 0.77 +0.4
103,971 + EX28DRAFT_3433 0.78 -1.6
103,971 + EX28DRAFT_3433 0.78 +0.8
104,179 + EX28DRAFT_3433 0.88 +0.1
104,184 + EX28DRAFT_3433 0.89 -1.9
104,184 + EX28DRAFT_3433 0.89 -0.6
104,187 - EX28DRAFT_3433 0.89 -0.2
104,339 + +0.4
104,465 - -0.0
104,476 - +0.0
104,586 - EX28DRAFT_3434 0.45 +0.8
104,630 - EX28DRAFT_3434 0.63 -0.2
104,696 - +0.7
104,696 - -0.1
104,701 + +0.3
104,715 + -0.9
104,716 - -0.1
104,773 + EX28DRAFT_3435 0.22 -0.8
104,774 - EX28DRAFT_3435 0.23 -0.1
104,785 + EX28DRAFT_3435 0.27 +0.2
104,786 - EX28DRAFT_3435 0.27 -1.0
104,786 - EX28DRAFT_3435 0.27 -0.2
104,926 + EX28DRAFT_3435 0.76 +0.5
104,946 - EX28DRAFT_3435 0.83 -0.3
104,991 + +0.1
104,992 - -0.1
104,995 + +0.0
105,016 - +0.4
105,058 - EX28DRAFT_3436 0.13 +0.0
105,140 + EX28DRAFT_3436 0.31 -1.7
105,140 + EX28DRAFT_3436 0.31 +0.2
105,142 + EX28DRAFT_3436 0.31 -0.5
105,142 + EX28DRAFT_3436 0.31 +0.1
105,143 - EX28DRAFT_3436 0.31 +0.1
105,162 - EX28DRAFT_3436 0.35 +0.3
105,162 - EX28DRAFT_3436 0.35 +1.1
105,162 - EX28DRAFT_3436 0.35 +0.5

Or see this region's nucleotide sequence