Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18650

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18645 and ABID97_RS18650 are separated by 162 nucleotidesABID97_RS18650 and ABID97_RS18655 are separated by 166 nucleotides ABID97_RS18645: ABID97_RS18645 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 3,842,950 to 3,844,239 _RS18645 ABID97_RS18650: ABID97_RS18650 - 2Fe-2S iron-sulfur cluster-binding protein, at 3,844,402 to 3,844,722 _RS18650 ABID97_RS18655: ABID97_RS18655 - LysR family transcriptional regulator, at 3,844,889 to 3,845,839 _RS18655 Position (kb) 3844 3845Strain fitness (log2 ratio) -1 0 1at 3843.933 kb on + strand, within ABID97_RS18645at 3843.934 kb on - strand, within ABID97_RS18645at 3844.139 kb on + strandat 3844.140 kb on - strandat 3844.391 kb on + strandat 3844.772 kb on - strandat 3845.458 kb on - strand, within ABID97_RS18655at 3845.466 kb on - strand, within ABID97_RS18655at 3845.546 kb on - strand, within ABID97_RS18655

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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3,843,933 + ABID97_RS18645 0.76 -0.1
3,843,934 - ABID97_RS18645 0.76 -0.5
3,844,139 + +0.2
3,844,140 - -0.3
3,844,391 + -0.9
3,844,772 - -0.4
3,845,458 - ABID97_RS18655 0.60 -0.1
3,845,466 - ABID97_RS18655 0.61 +0.3
3,845,546 - ABID97_RS18655 0.69 +0.3

Or see this region's nucleotide sequence