Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13150

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13145 and ABID97_RS13150 are separated by 116 nucleotidesABID97_RS13150 and ABID97_RS13155 are separated by 28 nucleotidesABID97_RS13155 and ABID97_RS13160 are separated by 87 nucleotides ABID97_RS13145: ABID97_RS13145 - flavin-dependent oxidoreductase, at 2,738,832 to 2,740,091 _RS13145 ABID97_RS13150: ABID97_RS13150 - LysR family transcriptional regulator, at 2,740,208 to 2,741,107 _RS13150 ABID97_RS13155: ABID97_RS13155 - MarR family winged helix-turn-helix transcriptional regulator, at 2,741,136 to 2,741,741 _RS13155 ABID97_RS13160: ABID97_RS13160 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 2,741,829 to 2,742,926 _RS13160 Position (kb) 2740 2741 2742Strain fitness (log2 ratio) -2 -1 0 1at 2739.565 kb on + strand, within ABID97_RS13145at 2739.805 kb on + strand, within ABID97_RS13145at 2740.197 kb on - strandat 2740.207 kb on + strandat 2741.137 kb on + strandat 2741.137 kb on + strandat 2741.590 kb on + strand, within ABID97_RS13155at 2741.650 kb on + strand, within ABID97_RS13155at 2741.651 kb on - strand, within ABID97_RS13155at 2741.963 kb on - strand, within ABID97_RS13160

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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2,739,565 + ABID97_RS13145 0.58 -0.7
2,739,805 + ABID97_RS13145 0.77 -0.1
2,740,197 - +0.6
2,740,207 + +0.2
2,741,137 + +0.5
2,741,137 + -0.2
2,741,590 + ABID97_RS13155 0.75 -1.5
2,741,650 + ABID97_RS13155 0.85 +0.3
2,741,651 - ABID97_RS13155 0.85 -1.9
2,741,963 - ABID97_RS13160 0.12 -0.8

Or see this region's nucleotide sequence