Experiment: D-Mannose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03885 and HMPREF1058_RS03880 are separated by 0 nucleotides HMPREF1058_RS03880 and HMPREF1058_RS03875 are separated by 78 nucleotides HMPREF1058_RS03875 and HMPREF1058_RS03870 are separated by 445 nucleotides
HMPREF1058_RS03885: HMPREF1058_RS03885 - insulinase family protein, at 165,140 to 166,426
_RS03885
HMPREF1058_RS03880: HMPREF1058_RS03880 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 166,427 to 167,185
_RS03880
HMPREF1058_RS03875: HMPREF1058_RS03875 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 167,264 to 167,638
_RS03875
HMPREF1058_RS03870: HMPREF1058_RS03870 - TetR/AcrR family transcriptional regulator, at 168,084 to 168,701
_RS03870
Position (kb) 166
167
168 Strain fitness (log2 ratio) -1
0
1
2
3 at 165.444 kb on + strand, within HMPREF1058_RS03885 at 165.519 kb on + strand, within HMPREF1058_RS03885 at 165.519 kb on + strand, within HMPREF1058_RS03885 at 165.519 kb on + strand, within HMPREF1058_RS03885 at 165.523 kb on + strand, within HMPREF1058_RS03885 at 165.523 kb on + strand, within HMPREF1058_RS03885 at 165.524 kb on - strand, within HMPREF1058_RS03885 at 165.524 kb on - strand, within HMPREF1058_RS03885 at 165.524 kb on - strand, within HMPREF1058_RS03885 at 165.524 kb on - strand, within HMPREF1058_RS03885 at 165.524 kb on - strand, within HMPREF1058_RS03885 at 165.524 kb on - strand, within HMPREF1058_RS03885 at 165.524 kb on - strand, within HMPREF1058_RS03885 at 165.525 kb on + strand, within HMPREF1058_RS03885 at 165.525 kb on + strand, within HMPREF1058_RS03885 at 165.526 kb on - strand, within HMPREF1058_RS03885 at 165.773 kb on - strand, within HMPREF1058_RS03885 at 165.773 kb on - strand, within HMPREF1058_RS03885 at 165.773 kb on - strand, within HMPREF1058_RS03885 at 165.780 kb on - strand, within HMPREF1058_RS03885 at 165.781 kb on + strand, within HMPREF1058_RS03885 at 165.817 kb on + strand, within HMPREF1058_RS03885 at 165.847 kb on - strand, within HMPREF1058_RS03885 at 166.100 kb on - strand, within HMPREF1058_RS03885 at 166.200 kb on - strand, within HMPREF1058_RS03885 at 166.241 kb on - strand, within HMPREF1058_RS03885 at 166.299 kb on - strand at 166.327 kb on + strand at 166.374 kb on - strand at 166.428 kb on + strand at 167.201 kb on - strand at 167.256 kb on + strand at 167.299 kb on + strand at 167.606 kb on + strand at 167.607 kb on - strand at 167.645 kb on + strand at 167.653 kb on + strand at 167.655 kb on + strand at 167.655 kb on + strand at 167.656 kb on - strand at 167.656 kb on - strand at 167.657 kb on + strand at 167.757 kb on - strand at 167.779 kb on - strand at 167.867 kb on + strand at 167.982 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 20 mM (C) remove 165,444 + HMPREF1058_RS03885 0.24 +1.1 165,519 + HMPREF1058_RS03885 0.29 +2.1 165,519 + HMPREF1058_RS03885 0.29 +2.6 165,519 + HMPREF1058_RS03885 0.29 +2.0 165,523 + HMPREF1058_RS03885 0.30 +2.3 165,523 + HMPREF1058_RS03885 0.30 +1.0 165,524 - HMPREF1058_RS03885 0.30 +0.1 165,524 - HMPREF1058_RS03885 0.30 +0.7 165,524 - HMPREF1058_RS03885 0.30 +1.6 165,524 - HMPREF1058_RS03885 0.30 +1.6 165,524 - HMPREF1058_RS03885 0.30 +1.8 165,524 - HMPREF1058_RS03885 0.30 +0.4 165,524 - HMPREF1058_RS03885 0.30 +0.1 165,525 + HMPREF1058_RS03885 0.30 +1.0 165,525 + HMPREF1058_RS03885 0.30 +0.3 165,526 - HMPREF1058_RS03885 0.30 +1.0 165,773 - HMPREF1058_RS03885 0.49 +1.1 165,773 - HMPREF1058_RS03885 0.49 +1.2 165,773 - HMPREF1058_RS03885 0.49 +1.3 165,780 - HMPREF1058_RS03885 0.50 +0.2 165,781 + HMPREF1058_RS03885 0.50 +0.6 165,817 + HMPREF1058_RS03885 0.53 +1.5 165,847 - HMPREF1058_RS03885 0.55 +0.9 166,100 - HMPREF1058_RS03885 0.75 +1.6 166,200 - HMPREF1058_RS03885 0.82 +1.8 166,241 - HMPREF1058_RS03885 0.86 +1.3 166,299 - +3.2 166,327 + +2.4 166,374 - +0.9 166,428 + -0.1 167,201 - -1.4 167,256 + +0.9 167,299 + +0.1 167,606 + -1.6 167,607 - -1.5 167,645 + +0.2 167,653 + +0.5 167,655 + +0.0 167,655 + +0.1 167,656 - -0.1 167,656 - -1.7 167,657 + +1.0 167,757 - +0.8 167,779 - +0.8 167,867 + +1.6 167,982 + -0.7
Or see this region's nucleotide sequence