Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0905 and EX28DRAFT_0906 overlap by 4 nucleotides EX28DRAFT_0906 and EX28DRAFT_0907 are separated by 10 nucleotides EX28DRAFT_0907 and EX28DRAFT_0908 overlap by 8 nucleotides EX28DRAFT_0908 and EX28DRAFT_0909 are separated by 7 nucleotides
EX28DRAFT_0905: EX28DRAFT_0905 - phage baseplate assembly protein V, at 908,800 to 909,435
_0905
EX28DRAFT_0906: EX28DRAFT_0906 - Phage baseplate assembly protein W, at 909,432 to 909,776
_0906
EX28DRAFT_0907: EX28DRAFT_0907 - Phage-related baseplate assembly protein, at 909,787 to 910,695
_0907
EX28DRAFT_0908: EX28DRAFT_0908 - phage tail protein, P2 protein I family, at 910,688 to 911,221
_0908
EX28DRAFT_0909: EX28DRAFT_0909 - Phage-related tail fibre protein, at 911,229 to 913,094
_0909
Position (kb) 909
910
911 Strain fitness (log2 ratio) -2
-1
0
1 at 908.811 kb on + strand at 908.811 kb on + strand at 908.812 kb on - strand at 909.128 kb on - strand, within EX28DRAFT_0905 at 909.243 kb on + strand, within EX28DRAFT_0905 at 909.244 kb on - strand, within EX28DRAFT_0905 at 909.444 kb on + strand at 909.476 kb on + strand, within EX28DRAFT_0906 at 909.494 kb on + strand, within EX28DRAFT_0906 at 909.713 kb on + strand, within EX28DRAFT_0906 at 909.713 kb on + strand, within EX28DRAFT_0906 at 909.714 kb on - strand, within EX28DRAFT_0906 at 909.805 kb on - strand at 909.844 kb on + strand at 909.845 kb on - strand at 909.845 kb on - strand at 909.913 kb on - strand, within EX28DRAFT_0907 at 909.956 kb on + strand, within EX28DRAFT_0907 at 909.957 kb on - strand, within EX28DRAFT_0907 at 910.034 kb on - strand, within EX28DRAFT_0907 at 910.062 kb on - strand, within EX28DRAFT_0907 at 910.429 kb on + strand, within EX28DRAFT_0907 at 910.432 kb on - strand, within EX28DRAFT_0907 at 910.513 kb on + strand, within EX28DRAFT_0907 at 910.513 kb on + strand, within EX28DRAFT_0907 at 910.514 kb on - strand, within EX28DRAFT_0907 at 910.514 kb on - strand, within EX28DRAFT_0907 at 910.514 kb on - strand, within EX28DRAFT_0907 at 910.514 kb on - strand, within EX28DRAFT_0907 at 910.974 kb on - strand, within EX28DRAFT_0908 at 911.076 kb on - strand, within EX28DRAFT_0908 at 911.141 kb on - strand, within EX28DRAFT_0908 at 911.184 kb on - strand at 911.216 kb on - strand at 911.236 kb on + strand at 911.237 kb on - strand at 911.243 kb on + strand at 911.274 kb on - strand at 911.446 kb on - strand, within EX28DRAFT_0909 at 911.511 kb on + strand, within EX28DRAFT_0909 at 911.511 kb on + strand, within EX28DRAFT_0909 at 911.606 kb on + strand, within EX28DRAFT_0909 at 911.607 kb on - strand, within EX28DRAFT_0909 at 911.620 kb on + strand, within EX28DRAFT_0909 at 911.621 kb on - strand, within EX28DRAFT_0909 at 911.682 kb on + strand, within EX28DRAFT_0909 at 911.683 kb on - strand, within EX28DRAFT_0909 at 911.693 kb on + strand, within EX28DRAFT_0909
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 908,811 + +0.2 908,811 + +0.3 908,812 - +0.3 909,128 - EX28DRAFT_0905 0.52 +0.4 909,243 + EX28DRAFT_0905 0.70 -0.6 909,244 - EX28DRAFT_0905 0.70 -0.0 909,444 + -0.0 909,476 + EX28DRAFT_0906 0.13 +0.6 909,494 + EX28DRAFT_0906 0.18 +0.1 909,713 + EX28DRAFT_0906 0.81 +1.5 909,713 + EX28DRAFT_0906 0.81 -0.1 909,714 - EX28DRAFT_0906 0.82 +0.3 909,805 - -1.4 909,844 + -1.9 909,845 - +0.1 909,845 - +1.3 909,913 - EX28DRAFT_0907 0.14 +0.0 909,956 + EX28DRAFT_0907 0.19 +1.0 909,957 - EX28DRAFT_0907 0.19 +0.0 910,034 - EX28DRAFT_0907 0.27 +0.2 910,062 - EX28DRAFT_0907 0.30 -0.2 910,429 + EX28DRAFT_0907 0.71 +0.4 910,432 - EX28DRAFT_0907 0.71 +0.1 910,513 + EX28DRAFT_0907 0.80 +0.0 910,513 + EX28DRAFT_0907 0.80 +1.1 910,514 - EX28DRAFT_0907 0.80 -0.3 910,514 - EX28DRAFT_0907 0.80 -0.0 910,514 - EX28DRAFT_0907 0.80 +1.6 910,514 - EX28DRAFT_0907 0.80 +1.3 910,974 - EX28DRAFT_0908 0.54 +0.9 911,076 - EX28DRAFT_0908 0.73 +0.8 911,141 - EX28DRAFT_0908 0.85 -0.4 911,184 - +0.0 911,216 - -0.7 911,236 + +0.3 911,237 - -1.4 911,243 + -0.6 911,274 - -0.3 911,446 - EX28DRAFT_0909 0.12 -0.0 911,511 + EX28DRAFT_0909 0.15 +0.3 911,511 + EX28DRAFT_0909 0.15 -0.5 911,606 + EX28DRAFT_0909 0.20 +0.0 911,607 - EX28DRAFT_0909 0.20 +0.8 911,620 + EX28DRAFT_0909 0.21 +0.3 911,621 - EX28DRAFT_0909 0.21 +1.7 911,682 + EX28DRAFT_0909 0.24 +0.1 911,683 - EX28DRAFT_0909 0.24 +0.6 911,693 + EX28DRAFT_0909 0.25 -2.4
Or see this region's nucleotide sequence