Strain Fitness in Rahnella sp. WP5 around EX31_RS22545

Experiment: L-Serine (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS22540 and EX31_RS22545 are separated by 38 nucleotidesEX31_RS22545 and EX31_RS22550 are separated by 129 nucleotides EX31_RS22540: EX31_RS22540 - ferrochelatase, at 262,466 to 263,428 _RS22540 EX31_RS22545: EX31_RS22545 - inosine/guanosine kinase, at 263,467 to 264,786 _RS22545 EX31_RS22550: EX31_RS22550 - Kef family K(+) transporter, at 264,916 to 266,607 _RS22550 Position (kb) 263 264 265Strain fitness (log2 ratio) -2 -1 0 1 2at 263.461 kb on + strandat 263.461 kb on + strandat 263.462 kb on - strandat 263.481 kb on + strandat 263.482 kb on - strandat 263.487 kb on + strandat 263.487 kb on + strandat 263.487 kb on + strandat 263.541 kb on + strandat 263.541 kb on + strandat 263.541 kb on + strandat 263.541 kb on + strandat 263.541 kb on + strandat 263.542 kb on - strandat 263.542 kb on - strandat 263.542 kb on - strandat 263.542 kb on - strandat 263.584 kb on + strandat 263.584 kb on + strandat 263.585 kb on - strandat 263.585 kb on - strandat 263.679 kb on + strand, within EX31_RS22545at 263.679 kb on + strand, within EX31_RS22545at 263.785 kb on + strand, within EX31_RS22545at 263.785 kb on + strand, within EX31_RS22545at 263.832 kb on + strand, within EX31_RS22545at 263.833 kb on - strand, within EX31_RS22545at 263.833 kb on - strand, within EX31_RS22545at 263.835 kb on + strand, within EX31_RS22545at 263.898 kb on + strand, within EX31_RS22545at 263.928 kb on - strand, within EX31_RS22545at 263.928 kb on - strand, within EX31_RS22545at 264.032 kb on + strand, within EX31_RS22545at 264.032 kb on + strand, within EX31_RS22545at 264.053 kb on + strand, within EX31_RS22545at 264.054 kb on - strand, within EX31_RS22545at 264.064 kb on + strand, within EX31_RS22545at 264.136 kb on + strand, within EX31_RS22545at 264.136 kb on + strand, within EX31_RS22545at 264.172 kb on + strand, within EX31_RS22545at 264.172 kb on + strand, within EX31_RS22545at 264.172 kb on + strand, within EX31_RS22545at 264.173 kb on - strand, within EX31_RS22545at 264.331 kb on - strand, within EX31_RS22545at 264.354 kb on + strand, within EX31_RS22545at 264.364 kb on + strand, within EX31_RS22545at 264.364 kb on + strand, within EX31_RS22545at 264.364 kb on + strand, within EX31_RS22545at 264.509 kb on - strand, within EX31_RS22545at 264.509 kb on - strand, within EX31_RS22545at 264.509 kb on - strand, within EX31_RS22545at 264.510 kb on + strand, within EX31_RS22545at 264.643 kb on + strand, within EX31_RS22545at 264.643 kb on + strand, within EX31_RS22545at 264.652 kb on + strand, within EX31_RS22545at 264.652 kb on + strand, within EX31_RS22545at 264.652 kb on + strand, within EX31_RS22545at 264.652 kb on + strand, within EX31_RS22545at 264.675 kb on + strandat 264.675 kb on + strandat 264.675 kb on + strandat 264.675 kb on + strandat 264.675 kb on + strandat 264.676 kb on - strandat 264.676 kb on - strandat 264.697 kb on + strandat 264.697 kb on + strandat 264.697 kb on + strandat 264.698 kb on - strandat 264.698 kb on - strandat 264.773 kb on - strandat 264.837 kb on + strandat 264.852 kb on - strandat 264.863 kb on + strandat 264.864 kb on - strandat 264.973 kb on - strandat 264.973 kb on - strandat 265.040 kb on + strandat 265.040 kb on + strandat 265.040 kb on + strandat 265.040 kb on + strandat 265.040 kb on + strandat 265.040 kb on + strandat 265.040 kb on + strandat 265.040 kb on + strandat 265.041 kb on - strandat 265.041 kb on - strandat 265.041 kb on - strandat 265.041 kb on - strandat 265.041 kb on - strandat 265.041 kb on - strandat 265.041 kb on - strandat 265.041 kb on - strandat 265.041 kb on - strandat 265.041 kb on - strandat 265.041 kb on - strandat 265.041 kb on - strandat 265.041 kb on - strandat 265.041 kb on - strandat 265.041 kb on - strandat 265.041 kb on - strandat 265.041 kb on - strandat 265.041 kb on - strandat 265.041 kb on - strandat 265.041 kb on - strandat 265.058 kb on + strandat 265.440 kb on - strand, within EX31_RS22550at 265.476 kb on + strand, within EX31_RS22550at 265.476 kb on + strand, within EX31_RS22550at 265.476 kb on + strand, within EX31_RS22550at 265.476 kb on + strand, within EX31_RS22550at 265.477 kb on - strand, within EX31_RS22550at 265.560 kb on + strand, within EX31_RS22550at 265.733 kb on - strand, within EX31_RS22550

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; shaking
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263,461 + -1.9
263,461 + -1.7
263,462 - -1.2
263,481 + +0.2
263,482 - +0.5
263,487 + +0.2
263,487 + -0.5
263,487 + +0.7
263,541 + -2.5
263,541 + +0.5
263,541 + -0.3
263,541 + +0.8
263,541 + +0.0
263,542 - +0.5
263,542 - +1.4
263,542 - -1.1
263,542 - +0.0
263,584 + -0.2
263,584 + +1.4
263,585 - -0.6
263,585 - +1.0
263,679 + EX31_RS22545 0.16 +0.0
263,679 + EX31_RS22545 0.16 -1.3
263,785 + EX31_RS22545 0.24 -0.5
263,785 + EX31_RS22545 0.24 -0.1
263,832 + EX31_RS22545 0.28 -0.5
263,833 - EX31_RS22545 0.28 +0.8
263,833 - EX31_RS22545 0.28 +1.4
263,835 + EX31_RS22545 0.28 -0.5
263,898 + EX31_RS22545 0.33 -1.0
263,928 - EX31_RS22545 0.35 +1.2
263,928 - EX31_RS22545 0.35 +1.3
264,032 + EX31_RS22545 0.43 -1.9
264,032 + EX31_RS22545 0.43 +0.6
264,053 + EX31_RS22545 0.44 -0.8
264,054 - EX31_RS22545 0.44 +0.1
264,064 + EX31_RS22545 0.45 +0.2
264,136 + EX31_RS22545 0.51 +1.0
264,136 + EX31_RS22545 0.51 -0.5
264,172 + EX31_RS22545 0.53 +0.0
264,172 + EX31_RS22545 0.53 +2.6
264,172 + EX31_RS22545 0.53 +0.0
264,173 - EX31_RS22545 0.53 -0.6
264,331 - EX31_RS22545 0.65 +2.0
264,354 + EX31_RS22545 0.67 +0.2
264,364 + EX31_RS22545 0.68 -0.5
264,364 + EX31_RS22545 0.68 +0.8
264,364 + EX31_RS22545 0.68 -0.6
264,509 - EX31_RS22545 0.79 -0.5
264,509 - EX31_RS22545 0.79 +2.6
264,509 - EX31_RS22545 0.79 +0.5
264,510 + EX31_RS22545 0.79 -0.3
264,643 + EX31_RS22545 0.89 +0.3
264,643 + EX31_RS22545 0.89 -2.2
264,652 + EX31_RS22545 0.90 +0.2
264,652 + EX31_RS22545 0.90 -0.5
264,652 + EX31_RS22545 0.90 -0.3
264,652 + EX31_RS22545 0.90 -1.2
264,675 + -0.2
264,675 + -0.5
264,675 + +0.1
264,675 + -0.2
264,675 + -0.0
264,676 - +0.4
264,676 - +0.7
264,697 + -0.4
264,697 + -0.9
264,697 + +0.6
264,698 - -0.8
264,698 - +0.8
264,773 - +0.6
264,837 + +0.5
264,852 - +1.0
264,863 + -0.1
264,864 - -1.3
264,973 - +0.6
264,973 - +0.2
265,040 + +0.5
265,040 + +1.2
265,040 + -1.5
265,040 + -0.6
265,040 + +1.0
265,040 + +0.7
265,040 + +0.4
265,040 + -1.5
265,041 - +0.1
265,041 - -1.1
265,041 - +0.8
265,041 - -0.2
265,041 - +0.7
265,041 - +0.8
265,041 - +0.4
265,041 - -1.0
265,041 - -0.3
265,041 - -0.2
265,041 - -1.2
265,041 - +0.3
265,041 - -0.1
265,041 - -0.9
265,041 - -0.6
265,041 - -0.6
265,041 - +1.0
265,041 - +1.6
265,041 - +2.4
265,041 - +0.3
265,058 + -0.6
265,440 - EX31_RS22550 0.31 +0.1
265,476 + EX31_RS22550 0.33 -0.2
265,476 + EX31_RS22550 0.33 -0.9
265,476 + EX31_RS22550 0.33 +2.0
265,476 + EX31_RS22550 0.33 +0.3
265,477 - EX31_RS22550 0.33 -0.2
265,560 + EX31_RS22550 0.38 -0.3
265,733 - EX31_RS22550 0.48 -0.4

Or see this region's nucleotide sequence