Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2065

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2064 and EX28DRAFT_2065 are separated by 92 nucleotidesEX28DRAFT_2065 and EX28DRAFT_2066 are separated by 69 nucleotides EX28DRAFT_2064: EX28DRAFT_2064 - Predicted nucleoside-diphosphate-sugar epimerases, at 2,087,683 to 2,089,119 _2064 EX28DRAFT_2065: EX28DRAFT_2065 - Nucleoside-diphosphate-sugar epimerases, at 2,089,212 to 2,090,225 _2065 EX28DRAFT_2066: EX28DRAFT_2066 - Uncharacterized protein contain chitin-binding domain type 3, at 2,090,295 to 2,092,124 _2066 Position (kb) 2089 2090 2091Strain fitness (log2 ratio) -2 -1 0 1 2at 2088.250 kb on + strand, within EX28DRAFT_2064at 2088.250 kb on + strand, within EX28DRAFT_2064at 2088.326 kb on - strand, within EX28DRAFT_2064at 2089.122 kb on - strandat 2089.211 kb on + strandat 2089.211 kb on + strandat 2089.539 kb on - strand, within EX28DRAFT_2065at 2089.544 kb on + strand, within EX28DRAFT_2065at 2089.544 kb on + strand, within EX28DRAFT_2065at 2089.545 kb on - strand, within EX28DRAFT_2065at 2089.545 kb on - strand, within EX28DRAFT_2065at 2089.692 kb on - strand, within EX28DRAFT_2065at 2089.692 kb on - strand, within EX28DRAFT_2065at 2089.749 kb on - strand, within EX28DRAFT_2065at 2089.779 kb on + strand, within EX28DRAFT_2065at 2089.830 kb on + strand, within EX28DRAFT_2065at 2089.831 kb on - strand, within EX28DRAFT_2065at 2089.831 kb on - strand, within EX28DRAFT_2065at 2089.831 kb on - strand, within EX28DRAFT_2065at 2089.905 kb on + strand, within EX28DRAFT_2065at 2089.905 kb on + strand, within EX28DRAFT_2065at 2089.905 kb on + strand, within EX28DRAFT_2065at 2089.957 kb on + strand, within EX28DRAFT_2065at 2090.049 kb on - strand, within EX28DRAFT_2065at 2090.087 kb on - strand, within EX28DRAFT_2065at 2090.097 kb on - strand, within EX28DRAFT_2065at 2090.377 kb on + strandat 2090.503 kb on - strand, within EX28DRAFT_2066at 2090.515 kb on + strand, within EX28DRAFT_2066at 2090.516 kb on - strand, within EX28DRAFT_2066at 2090.516 kb on - strand, within EX28DRAFT_2066at 2090.603 kb on + strand, within EX28DRAFT_2066at 2090.604 kb on - strand, within EX28DRAFT_2066at 2090.657 kb on + strand, within EX28DRAFT_2066at 2090.657 kb on + strand, within EX28DRAFT_2066at 2090.659 kb on + strand, within EX28DRAFT_2066at 2090.659 kb on + strand, within EX28DRAFT_2066at 2090.660 kb on - strand, within EX28DRAFT_2066at 2090.786 kb on + strand, within EX28DRAFT_2066at 2090.787 kb on - strand, within EX28DRAFT_2066at 2090.787 kb on - strand, within EX28DRAFT_2066at 2090.932 kb on + strand, within EX28DRAFT_2066at 2090.932 kb on + strand, within EX28DRAFT_2066at 2090.933 kb on - strand, within EX28DRAFT_2066at 2090.933 kb on - strand, within EX28DRAFT_2066at 2090.953 kb on + strand, within EX28DRAFT_2066at 2090.954 kb on - strand, within EX28DRAFT_2066at 2090.954 kb on - strand, within EX28DRAFT_2066at 2091.010 kb on + strand, within EX28DRAFT_2066at 2091.010 kb on + strand, within EX28DRAFT_2066at 2091.010 kb on + strand, within EX28DRAFT_2066at 2091.011 kb on - strand, within EX28DRAFT_2066at 2091.011 kb on - strand, within EX28DRAFT_2066at 2091.011 kb on - strand, within EX28DRAFT_2066at 2091.170 kb on - strand, within EX28DRAFT_2066at 2091.170 kb on - strand, within EX28DRAFT_2066

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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2,088,250 + EX28DRAFT_2064 0.39 -0.2
2,088,250 + EX28DRAFT_2064 0.39 -0.1
2,088,326 - EX28DRAFT_2064 0.45 +0.1
2,089,122 - -0.8
2,089,211 + +0.2
2,089,211 + -0.3
2,089,539 - EX28DRAFT_2065 0.32 -1.0
2,089,544 + EX28DRAFT_2065 0.33 +0.5
2,089,544 + EX28DRAFT_2065 0.33 -0.7
2,089,545 - EX28DRAFT_2065 0.33 -1.2
2,089,545 - EX28DRAFT_2065 0.33 -1.2
2,089,692 - EX28DRAFT_2065 0.47 +0.3
2,089,692 - EX28DRAFT_2065 0.47 -0.5
2,089,749 - EX28DRAFT_2065 0.53 +0.4
2,089,779 + EX28DRAFT_2065 0.56 -1.0
2,089,830 + EX28DRAFT_2065 0.61 -1.9
2,089,831 - EX28DRAFT_2065 0.61 +0.2
2,089,831 - EX28DRAFT_2065 0.61 +0.1
2,089,831 - EX28DRAFT_2065 0.61 -2.0
2,089,905 + EX28DRAFT_2065 0.68 -0.5
2,089,905 + EX28DRAFT_2065 0.68 -1.2
2,089,905 + EX28DRAFT_2065 0.68 -0.1
2,089,957 + EX28DRAFT_2065 0.73 +0.8
2,090,049 - EX28DRAFT_2065 0.83 +0.3
2,090,087 - EX28DRAFT_2065 0.86 -0.5
2,090,097 - EX28DRAFT_2065 0.87 -0.3
2,090,377 + -0.4
2,090,503 - EX28DRAFT_2066 0.11 -0.3
2,090,515 + EX28DRAFT_2066 0.12 -1.3
2,090,516 - EX28DRAFT_2066 0.12 +0.1
2,090,516 - EX28DRAFT_2066 0.12 -0.4
2,090,603 + EX28DRAFT_2066 0.17 +0.5
2,090,604 - EX28DRAFT_2066 0.17 +2.0
2,090,657 + EX28DRAFT_2066 0.20 -0.3
2,090,657 + EX28DRAFT_2066 0.20 -0.5
2,090,659 + EX28DRAFT_2066 0.20 +0.1
2,090,659 + EX28DRAFT_2066 0.20 +0.4
2,090,660 - EX28DRAFT_2066 0.20 -0.2
2,090,786 + EX28DRAFT_2066 0.27 +0.3
2,090,787 - EX28DRAFT_2066 0.27 +1.7
2,090,787 - EX28DRAFT_2066 0.27 +0.6
2,090,932 + EX28DRAFT_2066 0.35 -1.8
2,090,932 + EX28DRAFT_2066 0.35 -0.2
2,090,933 - EX28DRAFT_2066 0.35 +2.4
2,090,933 - EX28DRAFT_2066 0.35 -0.8
2,090,953 + EX28DRAFT_2066 0.36 -0.3
2,090,954 - EX28DRAFT_2066 0.36 -0.8
2,090,954 - EX28DRAFT_2066 0.36 +0.2
2,091,010 + EX28DRAFT_2066 0.39 +1.4
2,091,010 + EX28DRAFT_2066 0.39 +0.6
2,091,010 + EX28DRAFT_2066 0.39 +1.6
2,091,011 - EX28DRAFT_2066 0.39 +0.1
2,091,011 - EX28DRAFT_2066 0.39 -2.6
2,091,011 - EX28DRAFT_2066 0.39 -1.6
2,091,170 - EX28DRAFT_2066 0.48 +0.4
2,091,170 - EX28DRAFT_2066 0.48 -0.0

Or see this region's nucleotide sequence