Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01175 and CCNA_01176 overlap by 4 nucleotides CCNA_01176 and CCNA_01177 are separated by 6 nucleotides
CCNA_01175: CCNA_01175 - uroporphyrin-III C-methyltransferase, at 1,294,712 to 1,295,635
_01175
CCNA_01176: CCNA_01176 - hypothetical protein, at 1,295,632 to 1,295,991
_01176
CCNA_01177: CCNA_01177 - sulfite reductase, beta subunit, at 1,295,998 to 1,297,656
_01177
Position (kb)
1295
1296 Strain fitness (log2 ratio)
-2
-1
0
1 at 1294.637 kb on + strand at 1294.640 kb on - strand at 1294.683 kb on - strand at 1294.775 kb on + strand at 1294.793 kb on + strand at 1294.801 kb on + strand at 1294.821 kb on + strand, within CCNA_01175 at 1294.821 kb on + strand, within CCNA_01175 at 1294.830 kb on + strand, within CCNA_01175 at 1294.877 kb on + strand, within CCNA_01175 at 1295.018 kb on + strand, within CCNA_01175 at 1295.057 kb on - strand, within CCNA_01175 at 1295.063 kb on + strand, within CCNA_01175 at 1295.382 kb on + strand, within CCNA_01175 at 1295.472 kb on + strand, within CCNA_01175 at 1295.600 kb on - strand at 1295.611 kb on - strand at 1295.616 kb on + strand at 1295.624 kb on - strand at 1295.740 kb on - strand, within CCNA_01176 at 1295.864 kb on + strand, within CCNA_01176 at 1295.915 kb on + strand, within CCNA_01176 at 1295.931 kb on + strand, within CCNA_01176 at 1295.966 kb on + strand at 1295.988 kb on + strand at 1296.000 kb on + strand at 1296.142 kb on + strand at 1296.193 kb on + strand, within CCNA_01177 at 1296.343 kb on + strand, within CCNA_01177 at 1296.457 kb on + strand, within CCNA_01177 at 1296.548 kb on + strand, within CCNA_01177 at 1296.548 kb on + strand, within CCNA_01177 at 1296.562 kb on - strand, within CCNA_01177 at 1296.569 kb on + strand, within CCNA_01177 at 1296.590 kb on + strand, within CCNA_01177 at 1296.590 kb on + strand, within CCNA_01177 at 1296.590 kb on + strand, within CCNA_01177 at 1296.590 kb on + strand, within CCNA_01177 at 1296.628 kb on + strand, within CCNA_01177 at 1296.790 kb on + strand, within CCNA_01177 at 1296.845 kb on + strand, within CCNA_01177 at 1296.933 kb on + strand, within CCNA_01177 at 1296.933 kb on + strand, within CCNA_01177 at 1296.971 kb on + strand, within CCNA_01177 at 1296.988 kb on + strand, within CCNA_01177
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 1,294,637 + +0.7 1,294,640 - +0.0 1,294,683 - +0.3 1,294,775 + +0.5 1,294,793 + +0.6 1,294,801 + -0.0 1,294,821 + CCNA_01175 0.12 +0.2 1,294,821 + CCNA_01175 0.12 +1.4 1,294,830 + CCNA_01175 0.13 +0.6 1,294,877 + CCNA_01175 0.18 -0.1 1,295,018 + CCNA_01175 0.33 +0.0 1,295,057 - CCNA_01175 0.37 +1.3 1,295,063 + CCNA_01175 0.38 +0.9 1,295,382 + CCNA_01175 0.73 +1.3 1,295,472 + CCNA_01175 0.82 +0.6 1,295,600 - -0.5 1,295,611 - +0.9 1,295,616 + +0.1 1,295,624 - +0.4 1,295,740 - CCNA_01176 0.30 +0.9 1,295,864 + CCNA_01176 0.64 +0.5 1,295,915 + CCNA_01176 0.79 -1.4 1,295,931 + CCNA_01176 0.83 +0.1 1,295,966 + +0.1 1,295,988 + +0.9 1,296,000 + +0.3 1,296,142 + -0.8 1,296,193 + CCNA_01177 0.12 -0.8 1,296,343 + CCNA_01177 0.21 +0.3 1,296,457 + CCNA_01177 0.28 +0.7 1,296,548 + CCNA_01177 0.33 +0.4 1,296,548 + CCNA_01177 0.33 +1.1 1,296,562 - CCNA_01177 0.34 -1.8 1,296,569 + CCNA_01177 0.34 +1.2 1,296,590 + CCNA_01177 0.36 +0.7 1,296,590 + CCNA_01177 0.36 +0.7 1,296,590 + CCNA_01177 0.36 +0.1 1,296,590 + CCNA_01177 0.36 +0.3 1,296,628 + CCNA_01177 0.38 +0.0 1,296,790 + CCNA_01177 0.48 +0.7 1,296,845 + CCNA_01177 0.51 +0.2 1,296,933 + CCNA_01177 0.56 -0.8 1,296,933 + CCNA_01177 0.56 +0.8 1,296,971 + CCNA_01177 0.59 +0.0 1,296,988 + CCNA_01177 0.60 -0.1
Or see this region's nucleotide sequence