Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS21360

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS21355 and ABIE40_RS21360 overlap by 1 nucleotidesABIE40_RS21360 and ABIE40_RS21365 are separated by 18 nucleotidesABIE40_RS21365 and ABIE40_RS21370 overlap by 4 nucleotides ABIE40_RS21355: ABIE40_RS21355 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 388,836 to 389,930 _RS21355 ABIE40_RS21360: ABIE40_RS21360 - NAD(P)-dependent alcohol dehydrogenase, at 389,930 to 390,976 _RS21360 ABIE40_RS21365: ABIE40_RS21365 - carbohydrate ABC transporter permease, at 390,995 to 391,816 _RS21365 ABIE40_RS21370: ABIE40_RS21370 - sugar ABC transporter permease, at 391,813 to 392,676 _RS21370 Position (kb) 389 390 391Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5 6at 388.954 kb on - strand, within ABIE40_RS21355at 388.954 kb on - strand, within ABIE40_RS21355at 389.142 kb on - strand, within ABIE40_RS21355at 389.266 kb on + strand, within ABIE40_RS21355at 389.266 kb on + strand, within ABIE40_RS21355at 389.266 kb on + strand, within ABIE40_RS21355at 389.266 kb on + strand, within ABIE40_RS21355at 389.266 kb on + strand, within ABIE40_RS21355at 389.266 kb on + strand, within ABIE40_RS21355at 389.266 kb on + strand, within ABIE40_RS21355at 389.267 kb on - strand, within ABIE40_RS21355at 389.267 kb on - strand, within ABIE40_RS21355at 389.267 kb on - strand, within ABIE40_RS21355at 389.267 kb on - strand, within ABIE40_RS21355at 389.267 kb on - strand, within ABIE40_RS21355at 389.267 kb on - strand, within ABIE40_RS21355at 389.267 kb on - strand, within ABIE40_RS21355at 389.267 kb on - strand, within ABIE40_RS21355at 389.268 kb on + strand, within ABIE40_RS21355at 389.269 kb on - strand, within ABIE40_RS21355at 389.365 kb on + strand, within ABIE40_RS21355at 389.365 kb on + strand, within ABIE40_RS21355at 389.365 kb on + strand, within ABIE40_RS21355at 389.365 kb on + strand, within ABIE40_RS21355at 389.365 kb on + strand, within ABIE40_RS21355at 389.555 kb on - strand, within ABIE40_RS21355at 389.645 kb on + strand, within ABIE40_RS21355at 389.645 kb on + strand, within ABIE40_RS21355at 389.653 kb on + strand, within ABIE40_RS21355at 389.653 kb on + strand, within ABIE40_RS21355at 389.672 kb on - strand, within ABIE40_RS21355at 389.680 kb on + strand, within ABIE40_RS21355at 389.680 kb on + strand, within ABIE40_RS21355at 389.700 kb on + strand, within ABIE40_RS21355at 389.700 kb on + strand, within ABIE40_RS21355at 389.701 kb on - strand, within ABIE40_RS21355at 389.701 kb on - strand, within ABIE40_RS21355at 389.701 kb on - strand, within ABIE40_RS21355at 389.893 kb on + strandat 389.893 kb on + strandat 389.893 kb on + strandat 389.894 kb on - strandat 389.894 kb on - strandat 389.904 kb on + strandat 389.904 kb on + strandat 389.904 kb on + strandat 389.905 kb on - strandat 389.905 kb on - strandat 389.905 kb on - strandat 389.905 kb on - strandat 389.905 kb on - strandat 389.905 kb on - strandat 389.921 kb on + strandat 390.106 kb on - strand, within ABIE40_RS21360at 390.106 kb on - strand, within ABIE40_RS21360at 390.106 kb on - strand, within ABIE40_RS21360at 390.234 kb on + strand, within ABIE40_RS21360at 390.234 kb on + strand, within ABIE40_RS21360at 390.329 kb on - strand, within ABIE40_RS21360at 390.332 kb on + strand, within ABIE40_RS21360at 390.333 kb on - strand, within ABIE40_RS21360at 390.333 kb on - strand, within ABIE40_RS21360at 390.396 kb on + strand, within ABIE40_RS21360at 390.396 kb on + strand, within ABIE40_RS21360at 390.396 kb on + strand, within ABIE40_RS21360at 390.397 kb on - strand, within ABIE40_RS21360at 390.397 kb on - strand, within ABIE40_RS21360at 390.397 kb on - strand, within ABIE40_RS21360at 390.397 kb on - strand, within ABIE40_RS21360at 390.397 kb on - strand, within ABIE40_RS21360at 390.576 kb on + strand, within ABIE40_RS21360at 390.576 kb on + strand, within ABIE40_RS21360at 390.576 kb on + strand, within ABIE40_RS21360at 390.577 kb on - strand, within ABIE40_RS21360at 390.577 kb on - strand, within ABIE40_RS21360at 390.577 kb on - strand, within ABIE40_RS21360at 390.577 kb on - strand, within ABIE40_RS21360at 390.603 kb on + strand, within ABIE40_RS21360at 390.603 kb on + strand, within ABIE40_RS21360at 390.666 kb on + strand, within ABIE40_RS21360at 390.666 kb on + strand, within ABIE40_RS21360at 390.666 kb on + strand, within ABIE40_RS21360at 390.666 kb on + strand, within ABIE40_RS21360at 390.666 kb on + strand, within ABIE40_RS21360at 390.667 kb on - strand, within ABIE40_RS21360at 390.667 kb on - strand, within ABIE40_RS21360at 390.667 kb on - strand, within ABIE40_RS21360at 390.667 kb on - strand, within ABIE40_RS21360at 390.667 kb on - strand, within ABIE40_RS21360at 390.667 kb on - strand, within ABIE40_RS21360at 390.667 kb on - strand, within ABIE40_RS21360at 390.843 kb on + strand, within ABIE40_RS21360at 390.843 kb on + strand, within ABIE40_RS21360at 390.843 kb on + strand, within ABIE40_RS21360at 390.844 kb on - strand, within ABIE40_RS21360at 390.844 kb on - strand, within ABIE40_RS21360at 390.844 kb on - strand, within ABIE40_RS21360at 390.844 kb on - strand, within ABIE40_RS21360at 390.844 kb on - strand, within ABIE40_RS21360at 390.846 kb on + strand, within ABIE40_RS21360at 390.846 kb on + strand, within ABIE40_RS21360at 390.846 kb on + strand, within ABIE40_RS21360at 390.846 kb on + strand, within ABIE40_RS21360at 390.847 kb on - strand, within ABIE40_RS21360at 390.847 kb on - strand, within ABIE40_RS21360at 390.847 kb on - strand, within ABIE40_RS21360at 390.847 kb on - strand, within ABIE40_RS21360at 390.996 kb on + strandat 391.070 kb on + strandat 391.071 kb on - strandat 391.384 kb on + strand, within ABIE40_RS21365at 391.384 kb on + strand, within ABIE40_RS21365at 391.384 kb on + strand, within ABIE40_RS21365at 391.385 kb on - strand, within ABIE40_RS21365at 391.385 kb on - strand, within ABIE40_RS21365at 391.385 kb on - strand, within ABIE40_RS21365at 391.385 kb on - strand, within ABIE40_RS21365at 391.386 kb on + strand, within ABIE40_RS21365at 391.386 kb on + strand, within ABIE40_RS21365at 391.386 kb on + strand, within ABIE40_RS21365at 391.386 kb on + strand, within ABIE40_RS21365at 391.386 kb on + strand, within ABIE40_RS21365at 391.387 kb on - strand, within ABIE40_RS21365at 391.387 kb on - strand, within ABIE40_RS21365at 391.387 kb on - strand, within ABIE40_RS21365at 391.387 kb on - strand, within ABIE40_RS21365at 391.416 kb on + strand, within ABIE40_RS21365at 391.417 kb on - strand, within ABIE40_RS21365at 391.417 kb on - strand, within ABIE40_RS21365at 391.438 kb on + strand, within ABIE40_RS21365at 391.438 kb on + strand, within ABIE40_RS21365at 391.439 kb on - strand, within ABIE40_RS21365at 391.542 kb on + strand, within ABIE40_RS21365at 391.543 kb on - strand, within ABIE40_RS21365at 391.543 kb on - strand, within ABIE40_RS21365at 391.543 kb on - strand, within ABIE40_RS21365at 391.543 kb on - strand, within ABIE40_RS21365at 391.543 kb on - strand, within ABIE40_RS21365at 391.543 kb on - strand, within ABIE40_RS21365at 391.644 kb on + strand, within ABIE40_RS21365at 391.644 kb on + strand, within ABIE40_RS21365at 391.644 kb on + strand, within ABIE40_RS21365at 391.645 kb on - strand, within ABIE40_RS21365at 391.645 kb on - strand, within ABIE40_RS21365at 391.645 kb on - strand, within ABIE40_RS21365at 391.645 kb on - strand, within ABIE40_RS21365at 391.645 kb on - strand, within ABIE40_RS21365at 391.699 kb on + strand, within ABIE40_RS21365at 391.816 kb on + strandat 391.816 kb on + strandat 391.816 kb on + strandat 391.816 kb on + strandat 391.816 kb on + strandat 391.817 kb on - strandat 391.817 kb on - strandat 391.817 kb on - strandat 391.836 kb on + strandat 391.837 kb on - strandat 391.837 kb on - strandat 391.934 kb on + strand, within ABIE40_RS21370at 391.934 kb on + strand, within ABIE40_RS21370at 391.934 kb on + strand, within ABIE40_RS21370at 391.934 kb on + strand, within ABIE40_RS21370at 391.934 kb on + strand, within ABIE40_RS21370at 391.935 kb on - strand, within ABIE40_RS21370at 391.935 kb on - strand, within ABIE40_RS21370at 391.935 kb on - strand, within ABIE40_RS21370at 391.935 kb on - strand, within ABIE40_RS21370at 391.935 kb on - strand, within ABIE40_RS21370at 391.935 kb on - strand, within ABIE40_RS21370at 391.935 kb on - strand, within ABIE40_RS21370at 391.935 kb on - strand, within ABIE40_RS21370at 391.935 kb on - strand, within ABIE40_RS21370at 391.938 kb on + strand, within ABIE40_RS21370at 391.938 kb on + strand, within ABIE40_RS21370at 391.938 kb on + strand, within ABIE40_RS21370at 391.938 kb on + strand, within ABIE40_RS21370at 391.938 kb on + strand, within ABIE40_RS21370at 391.938 kb on + strand, within ABIE40_RS21370at 391.938 kb on + strand, within ABIE40_RS21370at 391.938 kb on + strand, within ABIE40_RS21370at 391.938 kb on + strand, within ABIE40_RS21370at 391.938 kb on + strand, within ABIE40_RS21370at 391.938 kb on + strand, within ABIE40_RS21370at 391.939 kb on - strand, within ABIE40_RS21370at 391.939 kb on - strand, within ABIE40_RS21370at 391.939 kb on - strand, within ABIE40_RS21370at 391.939 kb on - strand, within ABIE40_RS21370at 391.939 kb on - strand, within ABIE40_RS21370at 391.939 kb on - strand, within ABIE40_RS21370at 391.939 kb on - strand, within ABIE40_RS21370at 391.939 kb on - strand, within ABIE40_RS21370at 391.960 kb on - strand, within ABIE40_RS21370

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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388,954 - ABIE40_RS21355 0.11 +0.2
388,954 - ABIE40_RS21355 0.11 +0.5
389,142 - ABIE40_RS21355 0.28 +1.1
389,266 + ABIE40_RS21355 0.39 -0.3
389,266 + ABIE40_RS21355 0.39 +0.4
389,266 + ABIE40_RS21355 0.39 -0.5
389,266 + ABIE40_RS21355 0.39 -0.6
389,266 + ABIE40_RS21355 0.39 +0.2
389,266 + ABIE40_RS21355 0.39 -0.6
389,266 + ABIE40_RS21355 0.39 -1.9
389,267 - ABIE40_RS21355 0.39 +0.7
389,267 - ABIE40_RS21355 0.39 -2.0
389,267 - ABIE40_RS21355 0.39 +0.4
389,267 - ABIE40_RS21355 0.39 -1.2
389,267 - ABIE40_RS21355 0.39 -0.4
389,267 - ABIE40_RS21355 0.39 -0.3
389,267 - ABIE40_RS21355 0.39 -0.2
389,267 - ABIE40_RS21355 0.39 -0.2
389,268 + ABIE40_RS21355 0.39 +1.2
389,269 - ABIE40_RS21355 0.40 +0.8
389,365 + ABIE40_RS21355 0.48 -0.7
389,365 + ABIE40_RS21355 0.48 +0.5
389,365 + ABIE40_RS21355 0.48 -1.3
389,365 + ABIE40_RS21355 0.48 +0.6
389,365 + ABIE40_RS21355 0.48 -2.9
389,555 - ABIE40_RS21355 0.66 -0.2
389,645 + ABIE40_RS21355 0.74 -0.9
389,645 + ABIE40_RS21355 0.74 +0.4
389,653 + ABIE40_RS21355 0.75 -0.5
389,653 + ABIE40_RS21355 0.75 -1.4
389,672 - ABIE40_RS21355 0.76 -1.1
389,680 + ABIE40_RS21355 0.77 -1.3
389,680 + ABIE40_RS21355 0.77 -1.0
389,700 + ABIE40_RS21355 0.79 +0.9
389,700 + ABIE40_RS21355 0.79 +1.0
389,701 - ABIE40_RS21355 0.79 +0.9
389,701 - ABIE40_RS21355 0.79 +0.6
389,701 - ABIE40_RS21355 0.79 -2.7
389,893 + -0.5
389,893 + -1.3
389,893 + +1.2
389,894 - -0.2
389,894 - -0.8
389,904 + -0.8
389,904 + -0.2
389,904 + -1.0
389,905 - +0.3
389,905 - -1.0
389,905 - -0.5
389,905 - -2.5
389,905 - -1.5
389,905 - -1.0
389,921 + -1.7
390,106 - ABIE40_RS21360 0.17 -3.7
390,106 - ABIE40_RS21360 0.17 -5.3
390,106 - ABIE40_RS21360 0.17 -1.6
390,234 + ABIE40_RS21360 0.29 -3.1
390,234 + ABIE40_RS21360 0.29 -2.1
390,329 - ABIE40_RS21360 0.38 -2.4
390,332 + ABIE40_RS21360 0.38 -2.3
390,333 - ABIE40_RS21360 0.38 -4.3
390,333 - ABIE40_RS21360 0.38 -4.5
390,396 + ABIE40_RS21360 0.45 -0.8
390,396 + ABIE40_RS21360 0.45 -2.5
390,396 + ABIE40_RS21360 0.45 -0.8
390,397 - ABIE40_RS21360 0.45 -3.5
390,397 - ABIE40_RS21360 0.45 -2.1
390,397 - ABIE40_RS21360 0.45 -2.1
390,397 - ABIE40_RS21360 0.45 -2.9
390,397 - ABIE40_RS21360 0.45 -2.1
390,576 + ABIE40_RS21360 0.62 -0.1
390,576 + ABIE40_RS21360 0.62 +1.2
390,576 + ABIE40_RS21360 0.62 -2.1
390,577 - ABIE40_RS21360 0.62 -2.3
390,577 - ABIE40_RS21360 0.62 -1.5
390,577 - ABIE40_RS21360 0.62 -3.7
390,577 - ABIE40_RS21360 0.62 -3.0
390,603 + ABIE40_RS21360 0.64 -5.0
390,603 + ABIE40_RS21360 0.64 -3.0
390,666 + ABIE40_RS21360 0.70 -0.6
390,666 + ABIE40_RS21360 0.70 -0.8
390,666 + ABIE40_RS21360 0.70 -1.9
390,666 + ABIE40_RS21360 0.70 -3.1
390,666 + ABIE40_RS21360 0.70 -3.2
390,667 - ABIE40_RS21360 0.70 -3.8
390,667 - ABIE40_RS21360 0.70 -3.5
390,667 - ABIE40_RS21360 0.70 -1.0
390,667 - ABIE40_RS21360 0.70 -1.4
390,667 - ABIE40_RS21360 0.70 -1.9
390,667 - ABIE40_RS21360 0.70 -3.3
390,667 - ABIE40_RS21360 0.70 -0.6
390,843 + ABIE40_RS21360 0.87 -2.6
390,843 + ABIE40_RS21360 0.87 -3.0
390,843 + ABIE40_RS21360 0.87 -3.1
390,844 - ABIE40_RS21360 0.87 -5.0
390,844 - ABIE40_RS21360 0.87 -2.6
390,844 - ABIE40_RS21360 0.87 -1.7
390,844 - ABIE40_RS21360 0.87 -3.5
390,844 - ABIE40_RS21360 0.87 -1.6
390,846 + ABIE40_RS21360 0.87 -2.3
390,846 + ABIE40_RS21360 0.87 -4.0
390,846 + ABIE40_RS21360 0.87 -1.8
390,846 + ABIE40_RS21360 0.87 -2.9
390,847 - ABIE40_RS21360 0.88 -0.9
390,847 - ABIE40_RS21360 0.88 -2.1
390,847 - ABIE40_RS21360 0.88 -3.7
390,847 - ABIE40_RS21360 0.88 -1.7
390,996 + -2.5
391,070 + -3.1
391,071 - +2.6
391,384 + ABIE40_RS21365 0.47 -3.4
391,384 + ABIE40_RS21365 0.47 -0.8
391,384 + ABIE40_RS21365 0.47 -2.2
391,385 - ABIE40_RS21365 0.47 -1.0
391,385 - ABIE40_RS21365 0.47 -0.7
391,385 - ABIE40_RS21365 0.47 -1.2
391,385 - ABIE40_RS21365 0.47 +0.8
391,386 + ABIE40_RS21365 0.48 -2.9
391,386 + ABIE40_RS21365 0.48 -3.6
391,386 + ABIE40_RS21365 0.48 -2.3
391,386 + ABIE40_RS21365 0.48 -2.9
391,386 + ABIE40_RS21365 0.48 -3.1
391,387 - ABIE40_RS21365 0.48 +0.9
391,387 - ABIE40_RS21365 0.48 -0.1
391,387 - ABIE40_RS21365 0.48 -0.5
391,387 - ABIE40_RS21365 0.48 -0.6
391,416 + ABIE40_RS21365 0.51 -1.5
391,417 - ABIE40_RS21365 0.51 -1.0
391,417 - ABIE40_RS21365 0.51 +0.5
391,438 + ABIE40_RS21365 0.54 -2.3
391,438 + ABIE40_RS21365 0.54 -3.7
391,439 - ABIE40_RS21365 0.54 -0.9
391,542 + ABIE40_RS21365 0.67 -1.6
391,543 - ABIE40_RS21365 0.67 -1.8
391,543 - ABIE40_RS21365 0.67 +0.9
391,543 - ABIE40_RS21365 0.67 -2.6
391,543 - ABIE40_RS21365 0.67 -1.2
391,543 - ABIE40_RS21365 0.67 -1.0
391,543 - ABIE40_RS21365 0.67 -2.4
391,644 + ABIE40_RS21365 0.79 -3.2
391,644 + ABIE40_RS21365 0.79 -1.8
391,644 + ABIE40_RS21365 0.79 -1.8
391,645 - ABIE40_RS21365 0.79 -3.5
391,645 - ABIE40_RS21365 0.79 -1.7
391,645 - ABIE40_RS21365 0.79 -3.2
391,645 - ABIE40_RS21365 0.79 -1.9
391,645 - ABIE40_RS21365 0.79 +2.6
391,699 + ABIE40_RS21365 0.86 -1.6
391,816 + -5.1
391,816 + -1.6
391,816 + -3.0
391,816 + -4.4
391,816 + +0.2
391,817 - -2.1
391,817 - +0.9
391,817 - +0.9
391,836 + -3.2
391,837 - +6.0
391,837 - +3.8
391,934 + ABIE40_RS21370 0.14 -2.0
391,934 + ABIE40_RS21370 0.14 -1.8
391,934 + ABIE40_RS21370 0.14 -1.9
391,934 + ABIE40_RS21370 0.14 -1.7
391,934 + ABIE40_RS21370 0.14 -1.6
391,935 - ABIE40_RS21370 0.14 +0.4
391,935 - ABIE40_RS21370 0.14 +1.5
391,935 - ABIE40_RS21370 0.14 +0.1
391,935 - ABIE40_RS21370 0.14 +0.4
391,935 - ABIE40_RS21370 0.14 -0.6
391,935 - ABIE40_RS21370 0.14 +2.6
391,935 - ABIE40_RS21370 0.14 +1.4
391,935 - ABIE40_RS21370 0.14 -0.0
391,935 - ABIE40_RS21370 0.14 +1.2
391,938 + ABIE40_RS21370 0.14 +0.1
391,938 + ABIE40_RS21370 0.14 -3.3
391,938 + ABIE40_RS21370 0.14 -0.8
391,938 + ABIE40_RS21370 0.14 -3.2
391,938 + ABIE40_RS21370 0.14 -0.3
391,938 + ABIE40_RS21370 0.14 -1.3
391,938 + ABIE40_RS21370 0.14 -0.3
391,938 + ABIE40_RS21370 0.14 -2.0
391,938 + ABIE40_RS21370 0.14 -1.6
391,938 + ABIE40_RS21370 0.14 -1.6
391,938 + ABIE40_RS21370 0.14 -3.5
391,939 - ABIE40_RS21370 0.15 +0.2
391,939 - ABIE40_RS21370 0.15 -2.6
391,939 - ABIE40_RS21370 0.15 -2.3
391,939 - ABIE40_RS21370 0.15 +0.9
391,939 - ABIE40_RS21370 0.15 -0.2
391,939 - ABIE40_RS21370 0.15 +1.4
391,939 - ABIE40_RS21370 0.15 -0.2
391,939 - ABIE40_RS21370 0.15 -1.4
391,960 - ABIE40_RS21370 0.17 +2.6

Or see this region's nucleotide sequence