Strain Fitness in Pseudomonas sp. RS175 around PFR28_00780

Experiment: Cytidine carbon 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00779 and PFR28_00780 are separated by 7 nucleotidesPFR28_00780 and PFR28_00781 are separated by 75 nucleotides PFR28_00779: PFR28_00779 - hypothetical protein, at 834,515 to 835,408 _00779 PFR28_00780: PFR28_00780 - hypothetical protein, at 835,416 to 836,012 _00780 PFR28_00781: PFR28_00781 - Type I secretion system membrane fusion protein PrsE, at 836,088 to 837,452 _00781 Position (kb) 835 836 837Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 834.501 kb on + strandat 834.502 kb on - strandat 834.502 kb on - strandat 834.632 kb on + strand, within PFR28_00779at 834.632 kb on + strand, within PFR28_00779at 834.632 kb on + strand, within PFR28_00779at 834.632 kb on + strand, within PFR28_00779at 834.632 kb on + strand, within PFR28_00779at 834.633 kb on - strand, within PFR28_00779at 834.633 kb on - strand, within PFR28_00779at 834.633 kb on - strand, within PFR28_00779at 834.633 kb on - strand, within PFR28_00779at 834.633 kb on - strand, within PFR28_00779at 834.633 kb on - strand, within PFR28_00779at 834.770 kb on + strand, within PFR28_00779at 834.770 kb on + strand, within PFR28_00779at 834.771 kb on - strand, within PFR28_00779at 834.771 kb on - strand, within PFR28_00779at 834.771 kb on - strand, within PFR28_00779at 834.875 kb on + strand, within PFR28_00779at 834.876 kb on - strand, within PFR28_00779at 834.876 kb on - strand, within PFR28_00779at 834.876 kb on - strand, within PFR28_00779at 834.876 kb on - strand, within PFR28_00779at 834.926 kb on + strand, within PFR28_00779at 834.927 kb on - strand, within PFR28_00779at 835.007 kb on + strand, within PFR28_00779at 835.007 kb on + strand, within PFR28_00779at 835.007 kb on + strand, within PFR28_00779at 835.007 kb on + strand, within PFR28_00779at 835.007 kb on + strand, within PFR28_00779at 835.008 kb on - strand, within PFR28_00779at 835.008 kb on - strand, within PFR28_00779at 835.008 kb on - strand, within PFR28_00779at 835.008 kb on - strand, within PFR28_00779at 835.008 kb on - strand, within PFR28_00779at 835.008 kb on - strand, within PFR28_00779at 835.019 kb on + strand, within PFR28_00779at 835.040 kb on + strand, within PFR28_00779at 835.040 kb on + strand, within PFR28_00779at 835.041 kb on - strand, within PFR28_00779at 835.041 kb on - strand, within PFR28_00779at 835.041 kb on - strand, within PFR28_00779at 835.041 kb on - strand, within PFR28_00779at 835.223 kb on + strand, within PFR28_00779at 835.224 kb on - strand, within PFR28_00779at 835.224 kb on - strand, within PFR28_00779at 835.247 kb on + strand, within PFR28_00779at 835.247 kb on + strand, within PFR28_00779at 835.248 kb on - strand, within PFR28_00779at 835.248 kb on - strand, within PFR28_00779at 835.248 kb on - strand, within PFR28_00779at 835.248 kb on - strand, within PFR28_00779at 835.248 kb on - strand, within PFR28_00779at 835.642 kb on - strand, within PFR28_00780at 835.994 kb on + strandat 835.994 kb on + strandat 835.995 kb on - strandat 836.011 kb on - strandat 836.058 kb on + strandat 836.141 kb on - strandat 836.141 kb on - strandat 836.141 kb on - strandat 836.141 kb on - strandat 836.141 kb on - strandat 836.171 kb on + strandat 836.171 kb on + strandat 836.243 kb on + strand, within PFR28_00781at 836.260 kb on + strand, within PFR28_00781at 836.261 kb on - strand, within PFR28_00781at 836.261 kb on - strand, within PFR28_00781at 836.333 kb on - strand, within PFR28_00781at 836.341 kb on + strand, within PFR28_00781at 836.341 kb on + strand, within PFR28_00781at 836.342 kb on - strand, within PFR28_00781at 836.347 kb on + strand, within PFR28_00781at 836.348 kb on - strand, within PFR28_00781

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine carbon 10 mM
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834,501 + -1.4
834,502 - +0.7
834,502 - -4.0
834,632 + PFR28_00779 0.13 -1.0
834,632 + PFR28_00779 0.13 -2.4
834,632 + PFR28_00779 0.13 -2.0
834,632 + PFR28_00779 0.13 -1.3
834,632 + PFR28_00779 0.13 -0.4
834,633 - PFR28_00779 0.13 -0.9
834,633 - PFR28_00779 0.13 -1.8
834,633 - PFR28_00779 0.13 +1.0
834,633 - PFR28_00779 0.13 -0.6
834,633 - PFR28_00779 0.13 -0.4
834,633 - PFR28_00779 0.13 +1.6
834,770 + PFR28_00779 0.29 +0.6
834,770 + PFR28_00779 0.29 +0.6
834,771 - PFR28_00779 0.29 -0.9
834,771 - PFR28_00779 0.29 -1.1
834,771 - PFR28_00779 0.29 -2.6
834,875 + PFR28_00779 0.40 +2.3
834,876 - PFR28_00779 0.40 -0.2
834,876 - PFR28_00779 0.40 -1.2
834,876 - PFR28_00779 0.40 +0.4
834,876 - PFR28_00779 0.40 -2.3
834,926 + PFR28_00779 0.46 +0.5
834,927 - PFR28_00779 0.46 +0.5
835,007 + PFR28_00779 0.55 +0.2
835,007 + PFR28_00779 0.55 -1.7
835,007 + PFR28_00779 0.55 +0.8
835,007 + PFR28_00779 0.55 +2.2
835,007 + PFR28_00779 0.55 +1.7
835,008 - PFR28_00779 0.55 -1.1
835,008 - PFR28_00779 0.55 -0.4
835,008 - PFR28_00779 0.55 -0.9
835,008 - PFR28_00779 0.55 -0.3
835,008 - PFR28_00779 0.55 +0.2
835,008 - PFR28_00779 0.55 -2.9
835,019 + PFR28_00779 0.56 -3.2
835,040 + PFR28_00779 0.59 -0.6
835,040 + PFR28_00779 0.59 +0.7
835,041 - PFR28_00779 0.59 +1.6
835,041 - PFR28_00779 0.59 -1.5
835,041 - PFR28_00779 0.59 +0.6
835,041 - PFR28_00779 0.59 -0.7
835,223 + PFR28_00779 0.79 +1.0
835,224 - PFR28_00779 0.79 +0.8
835,224 - PFR28_00779 0.79 -0.1
835,247 + PFR28_00779 0.82 -0.3
835,247 + PFR28_00779 0.82 +0.4
835,248 - PFR28_00779 0.82 -1.1
835,248 - PFR28_00779 0.82 +0.4
835,248 - PFR28_00779 0.82 -1.2
835,248 - PFR28_00779 0.82 +2.4
835,248 - PFR28_00779 0.82 +0.8
835,642 - PFR28_00780 0.38 -3.2
835,994 + -0.4
835,994 + -0.6
835,995 - -0.9
836,011 - +0.5
836,058 + -0.1
836,141 - +0.7
836,141 - +1.1
836,141 - -0.1
836,141 - +1.0
836,141 - +0.1
836,171 + -1.3
836,171 + -1.2
836,243 + PFR28_00781 0.11 +0.7
836,260 + PFR28_00781 0.13 -1.2
836,261 - PFR28_00781 0.13 +1.1
836,261 - PFR28_00781 0.13 -1.7
836,333 - PFR28_00781 0.18 -0.3
836,341 + PFR28_00781 0.19 -1.1
836,341 + PFR28_00781 0.19 +0.1
836,342 - PFR28_00781 0.19 -1.2
836,347 + PFR28_00781 0.19 -1.5
836,348 - PFR28_00781 0.19 -2.7

Or see this region's nucleotide sequence