Strain Fitness in Rahnella sp. WP5 around EX31_RS25265

Experiment: L-Serine (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS08740 and EX31_RS08745 are separated by 87 nucleotidesEX31_RS08745 and EX31_RS08750 are separated by 39 nucleotidesEX31_RS08750 and EX31_RS25265 are separated by 4 nucleotidesEX31_RS25265 and EX31_RS08755 are separated by 5 nucleotidesEX31_RS08755 and EX31_RS08760 are separated by 150 nucleotides EX31_RS08740: EX31_RS08740 - opacity-associated protein OapA, at 258,101 to 258,811 _RS08740 EX31_RS08745: EX31_RS08745 - 50S ribosomal protein L9, at 258,899 to 259,351 _RS08745 EX31_RS08750: EX31_RS08750 - 30S ribosomal protein S18, at 259,391 to 259,618 _RS08750 EX31_RS25265: EX31_RS25265 - primosomal replication protein N, at 259,623 to 259,940 _RS25265 EX31_RS08755: EX31_RS08755 - 30S ribosomal protein S6, at 259,946 to 260,338 _RS08755 EX31_RS08760: EX31_RS08760 - esterase, at 260,489 to 261,238 _RS08760 Position (kb) 259 260Strain fitness (log2 ratio) -2 -1 0 1 2at 258.630 kb on + strand, within EX31_RS08740at 258.648 kb on + strand, within EX31_RS08740at 258.648 kb on + strand, within EX31_RS08740at 258.673 kb on + strand, within EX31_RS08740at 258.673 kb on + strand, within EX31_RS08740at 258.674 kb on - strand, within EX31_RS08740at 258.674 kb on - strand, within EX31_RS08740at 258.702 kb on + strand, within EX31_RS08740at 258.702 kb on + strand, within EX31_RS08740at 258.702 kb on + strand, within EX31_RS08740at 258.702 kb on + strand, within EX31_RS08740at 258.702 kb on + strand, within EX31_RS08740at 258.702 kb on + strand, within EX31_RS08740at 258.703 kb on - strand, within EX31_RS08740at 258.760 kb on + strandat 258.773 kb on - strandat 258.806 kb on - strandat 258.821 kb on + strandat 258.821 kb on + strandat 258.886 kb on - strandat 258.921 kb on - strandat 258.921 kb on - strandat 258.921 kb on - strandat 258.921 kb on - strandat 258.921 kb on - strandat 258.939 kb on - strandat 259.019 kb on - strand, within EX31_RS08745at 259.019 kb on - strand, within EX31_RS08745at 259.073 kb on - strand, within EX31_RS08745at 259.119 kb on - strand, within EX31_RS08745at 259.378 kb on - strandat 259.378 kb on - strandat 260.481 kb on + strandat 260.490 kb on + strandat 260.545 kb on + strandat 260.545 kb on + strandat 260.545 kb on + strandat 260.545 kb on + strandat 260.546 kb on - strandat 260.546 kb on - strandat 260.546 kb on - strandat 260.569 kb on + strand, within EX31_RS08760at 260.570 kb on - strand, within EX31_RS08760at 260.581 kb on + strand, within EX31_RS08760at 260.681 kb on - strand, within EX31_RS08760at 260.681 kb on - strand, within EX31_RS08760at 260.747 kb on + strand, within EX31_RS08760at 260.747 kb on + strand, within EX31_RS08760at 260.747 kb on + strand, within EX31_RS08760at 260.748 kb on - strand, within EX31_RS08760at 260.748 kb on - strand, within EX31_RS08760at 260.778 kb on + strand, within EX31_RS08760at 260.778 kb on + strand, within EX31_RS08760at 260.778 kb on + strand, within EX31_RS08760at 260.778 kb on + strand, within EX31_RS08760at 260.778 kb on + strand, within EX31_RS08760at 260.778 kb on + strand, within EX31_RS08760at 260.779 kb on - strand, within EX31_RS08760at 260.779 kb on - strand, within EX31_RS08760at 260.779 kb on - strand, within EX31_RS08760at 260.779 kb on - strand, within EX31_RS08760at 260.779 kb on - strand, within EX31_RS08760at 260.779 kb on - strand, within EX31_RS08760at 260.779 kb on - strand, within EX31_RS08760at 260.779 kb on - strand, within EX31_RS08760at 260.779 kb on - strand, within EX31_RS08760at 260.779 kb on - strand, within EX31_RS08760at 260.779 kb on - strand, within EX31_RS08760at 260.801 kb on + strand, within EX31_RS08760at 260.802 kb on - strand, within EX31_RS08760at 260.802 kb on - strand, within EX31_RS08760at 260.846 kb on - strand, within EX31_RS08760at 260.913 kb on - strand, within EX31_RS08760

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; shaking
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258,630 + EX31_RS08740 0.74 -0.5
258,648 + EX31_RS08740 0.77 +0.5
258,648 + EX31_RS08740 0.77 -1.1
258,673 + EX31_RS08740 0.80 +0.3
258,673 + EX31_RS08740 0.80 -1.4
258,674 - EX31_RS08740 0.81 +1.1
258,674 - EX31_RS08740 0.81 +0.4
258,702 + EX31_RS08740 0.85 +0.3
258,702 + EX31_RS08740 0.85 +1.1
258,702 + EX31_RS08740 0.85 +0.3
258,702 + EX31_RS08740 0.85 -1.2
258,702 + EX31_RS08740 0.85 +0.4
258,702 + EX31_RS08740 0.85 +0.9
258,703 - EX31_RS08740 0.85 -2.0
258,760 + +1.6
258,773 - +0.1
258,806 - +0.4
258,821 + -0.4
258,821 + +0.5
258,886 - +0.6
258,921 - +1.0
258,921 - -1.0
258,921 - -2.2
258,921 - -0.8
258,921 - +1.4
258,939 - +0.4
259,019 - EX31_RS08745 0.26 -1.5
259,019 - EX31_RS08745 0.26 -1.1
259,073 - EX31_RS08745 0.38 -0.8
259,119 - EX31_RS08745 0.49 -1.2
259,378 - -0.2
259,378 - -1.2
260,481 + -0.1
260,490 + +0.1
260,545 + -0.4
260,545 + -0.1
260,545 + -0.1
260,545 + +0.5
260,546 - -0.1
260,546 - -0.2
260,546 - +0.6
260,569 + EX31_RS08760 0.11 -0.5
260,570 - EX31_RS08760 0.11 +1.4
260,581 + EX31_RS08760 0.12 +0.0
260,681 - EX31_RS08760 0.26 +0.2
260,681 - EX31_RS08760 0.26 +0.7
260,747 + EX31_RS08760 0.34 -0.3
260,747 + EX31_RS08760 0.34 -0.8
260,747 + EX31_RS08760 0.34 -0.2
260,748 - EX31_RS08760 0.35 -0.9
260,748 - EX31_RS08760 0.35 -0.7
260,778 + EX31_RS08760 0.39 -0.5
260,778 + EX31_RS08760 0.39 +0.2
260,778 + EX31_RS08760 0.39 -0.1
260,778 + EX31_RS08760 0.39 -2.2
260,778 + EX31_RS08760 0.39 +0.2
260,778 + EX31_RS08760 0.39 +2.1
260,779 - EX31_RS08760 0.39 -1.6
260,779 - EX31_RS08760 0.39 -0.3
260,779 - EX31_RS08760 0.39 -0.3
260,779 - EX31_RS08760 0.39 -0.1
260,779 - EX31_RS08760 0.39 +0.1
260,779 - EX31_RS08760 0.39 +0.6
260,779 - EX31_RS08760 0.39 +0.2
260,779 - EX31_RS08760 0.39 -1.8
260,779 - EX31_RS08760 0.39 +1.5
260,779 - EX31_RS08760 0.39 +0.4
260,779 - EX31_RS08760 0.39 +0.7
260,801 + EX31_RS08760 0.42 +0.6
260,802 - EX31_RS08760 0.42 -1.0
260,802 - EX31_RS08760 0.42 -0.0
260,846 - EX31_RS08760 0.48 -0.9
260,913 - EX31_RS08760 0.57 +0.4

Or see this region's nucleotide sequence