Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00794 and CCNA_00795 are separated by 10 nucleotides CCNA_00795 and CCNA_00796 overlap by 8 nucleotides CCNA_00796 and CCNA_03940 are separated by 109 nucleotides CCNA_03940 and CCNA_00798 are separated by 8 nucleotides
CCNA_00794: CCNA_00794 - conserved membrane spanning protein, at 857,776 to 858,969
_00794
CCNA_00795: CCNA_00795 - two-component response regulator FixJ, at 858,980 to 859,588
_00795
CCNA_00796: CCNA_00796 - oxygen sensory histidine kinase FixL, at 859,581 to 861,068
_00796
CCNA_03940: CCNA_03940 - hypothetical protein, at 861,178 to 861,285
_03940
CCNA_00798: CCNA_00798 - ABC transporter, ATP-binding protein cydC, at 861,294 to 862,892
_00798
Position (kb) 859
860
861
862 Strain fitness (log2 ratio) -2
-1
0
1 at 858.598 kb on - strand, within CCNA_00794 at 858.625 kb on + strand, within CCNA_00794 at 858.633 kb on - strand, within CCNA_00794 at 858.633 kb on - strand, within CCNA_00794 at 858.730 kb on + strand, within CCNA_00794 at 858.730 kb on + strand, within CCNA_00794 at 858.738 kb on - strand, within CCNA_00794 at 858.769 kb on - strand, within CCNA_00794 at 858.791 kb on + strand, within CCNA_00794 at 858.791 kb on + strand, within CCNA_00794 at 858.799 kb on - strand, within CCNA_00794 at 858.806 kb on - strand, within CCNA_00794 at 858.856 kb on - strand at 858.918 kb on + strand at 858.938 kb on - strand at 859.000 kb on + strand at 859.010 kb on + strand at 859.017 kb on + strand at 859.032 kb on + strand at 859.064 kb on + strand, within CCNA_00795 at 859.064 kb on + strand, within CCNA_00795 at 859.083 kb on - strand, within CCNA_00795 at 859.093 kb on + strand, within CCNA_00795 at 859.133 kb on - strand, within CCNA_00795 at 859.163 kb on - strand, within CCNA_00795 at 859.261 kb on + strand, within CCNA_00795 at 859.343 kb on + strand, within CCNA_00795 at 859.389 kb on + strand, within CCNA_00795 at 859.402 kb on - strand, within CCNA_00795 at 859.406 kb on + strand, within CCNA_00795 at 859.414 kb on - strand, within CCNA_00795 at 859.443 kb on + strand, within CCNA_00795 at 859.443 kb on + strand, within CCNA_00795 at 859.451 kb on - strand, within CCNA_00795 at 859.453 kb on + strand, within CCNA_00795 at 859.463 kb on + strand, within CCNA_00795 at 859.471 kb on - strand, within CCNA_00795 at 859.492 kb on - strand, within CCNA_00795 at 859.498 kb on + strand, within CCNA_00795 at 859.514 kb on + strand, within CCNA_00795 at 859.543 kb on - strand at 859.570 kb on + strand at 859.576 kb on - strand at 859.585 kb on - strand at 859.625 kb on + strand at 859.636 kb on + strand at 859.644 kb on - strand at 859.667 kb on + strand at 859.668 kb on - strand at 859.672 kb on + strand at 859.672 kb on + strand at 859.680 kb on - strand at 859.680 kb on - strand at 859.680 kb on - strand at 859.680 kb on - strand at 859.727 kb on + strand at 859.727 kb on + strand at 859.729 kb on + strand at 859.735 kb on - strand, within CCNA_00796 at 859.737 kb on - strand, within CCNA_00796 at 859.737 kb on - strand, within CCNA_00796 at 859.781 kb on - strand, within CCNA_00796 at 859.828 kb on - strand, within CCNA_00796 at 859.854 kb on + strand, within CCNA_00796 at 859.854 kb on + strand, within CCNA_00796 at 859.862 kb on - strand, within CCNA_00796 at 859.862 kb on - strand, within CCNA_00796 at 859.862 kb on - strand, within CCNA_00796 at 859.877 kb on + strand, within CCNA_00796 at 859.885 kb on - strand, within CCNA_00796 at 859.885 kb on - strand, within CCNA_00796 at 859.889 kb on + strand, within CCNA_00796 at 859.935 kb on + strand, within CCNA_00796 at 859.986 kb on - strand, within CCNA_00796 at 860.030 kb on - strand, within CCNA_00796 at 860.056 kb on - strand, within CCNA_00796 at 860.056 kb on - strand, within CCNA_00796 at 860.058 kb on + strand, within CCNA_00796 at 860.058 kb on + strand, within CCNA_00796 at 860.058 kb on + strand, within CCNA_00796 at 860.066 kb on - strand, within CCNA_00796 at 860.133 kb on + strand, within CCNA_00796 at 860.141 kb on - strand, within CCNA_00796 at 860.141 kb on - strand, within CCNA_00796 at 860.150 kb on + strand, within CCNA_00796 at 860.185 kb on - strand, within CCNA_00796 at 860.202 kb on - strand, within CCNA_00796 at 860.217 kb on + strand, within CCNA_00796 at 860.225 kb on + strand, within CCNA_00796 at 860.225 kb on - strand, within CCNA_00796 at 860.225 kb on - strand, within CCNA_00796 at 860.249 kb on + strand, within CCNA_00796 at 860.257 kb on - strand, within CCNA_00796 at 860.268 kb on + strand, within CCNA_00796 at 860.268 kb on + strand, within CCNA_00796 at 860.313 kb on - strand, within CCNA_00796 at 860.313 kb on - strand, within CCNA_00796 at 860.347 kb on + strand, within CCNA_00796 at 860.347 kb on + strand, within CCNA_00796 at 860.461 kb on + strand, within CCNA_00796 at 860.490 kb on + strand, within CCNA_00796 at 860.498 kb on - strand, within CCNA_00796 at 860.498 kb on - strand, within CCNA_00796 at 860.559 kb on - strand, within CCNA_00796 at 860.590 kb on - strand, within CCNA_00796 at 860.615 kb on + strand, within CCNA_00796 at 860.629 kb on - strand, within CCNA_00796 at 860.677 kb on - strand, within CCNA_00796 at 860.679 kb on + strand, within CCNA_00796 at 860.687 kb on - strand, within CCNA_00796 at 860.687 kb on - strand, within CCNA_00796 at 860.697 kb on - strand, within CCNA_00796 at 860.731 kb on + strand, within CCNA_00796 at 860.731 kb on + strand, within CCNA_00796 at 860.731 kb on + strand, within CCNA_00796 at 860.739 kb on - strand, within CCNA_00796 at 860.742 kb on + strand, within CCNA_00796 at 860.845 kb on + strand, within CCNA_00796 at 860.850 kb on + strand, within CCNA_00796 at 860.850 kb on + strand, within CCNA_00796 at 860.856 kb on + strand, within CCNA_00796 at 860.858 kb on - strand, within CCNA_00796 at 860.886 kb on + strand, within CCNA_00796 at 860.891 kb on + strand, within CCNA_00796 at 860.894 kb on - strand, within CCNA_00796 at 860.894 kb on - strand, within CCNA_00796 at 860.894 kb on - strand, within CCNA_00796 at 860.894 kb on - strand, within CCNA_00796 at 860.894 kb on - strand, within CCNA_00796 at 860.901 kb on + strand, within CCNA_00796 at 860.901 kb on + strand, within CCNA_00796 at 860.901 kb on + strand, within CCNA_00796 at 860.901 kb on + strand, within CCNA_00796 at 860.909 kb on - strand, within CCNA_00796 at 860.909 kb on - strand, within CCNA_00796 at 860.909 kb on - strand, within CCNA_00796 at 860.909 kb on - strand, within CCNA_00796 at 860.909 kb on - strand, within CCNA_00796 at 861.019 kb on + strand at 861.028 kb on + strand at 861.038 kb on + strand at 861.082 kb on - strand at 861.099 kb on + strand at 861.106 kb on - strand at 861.107 kb on - strand at 861.124 kb on + strand at 861.124 kb on + strand at 861.132 kb on - strand at 861.132 kb on - strand at 861.132 kb on - strand at 861.132 kb on - strand at 861.174 kb on - strand at 861.252 kb on + strand, within CCNA_03940 at 861.252 kb on + strand, within CCNA_03940 at 861.259 kb on + strand, within CCNA_03940 at 861.260 kb on - strand, within CCNA_03940 at 861.300 kb on - strand at 861.424 kb on - strand at 861.462 kb on - strand, within CCNA_00798 at 861.472 kb on + strand, within CCNA_00798 at 861.482 kb on - strand, within CCNA_00798 at 861.529 kb on + strand, within CCNA_00798 at 861.539 kb on + strand, within CCNA_00798 at 861.539 kb on + strand, within CCNA_00798 at 861.542 kb on - strand, within CCNA_00798 at 861.594 kb on + strand, within CCNA_00798 at 861.594 kb on + strand, within CCNA_00798 at 861.602 kb on - strand, within CCNA_00798 at 861.614 kb on - strand, within CCNA_00798 at 861.655 kb on + strand, within CCNA_00798 at 861.655 kb on + strand, within CCNA_00798 at 861.655 kb on + strand, within CCNA_00798 at 861.663 kb on - strand, within CCNA_00798 at 861.663 kb on - strand, within CCNA_00798 at 861.663 kb on - strand, within CCNA_00798 at 861.663 kb on - strand, within CCNA_00798 at 861.706 kb on - strand, within CCNA_00798 at 861.720 kb on - strand, within CCNA_00798 at 861.764 kb on + strand, within CCNA_00798 at 861.772 kb on - strand, within CCNA_00798 at 861.788 kb on + strand, within CCNA_00798 at 861.797 kb on - strand, within CCNA_00798 at 861.832 kb on + strand, within CCNA_00798 at 861.840 kb on - strand, within CCNA_00798 at 861.842 kb on + strand, within CCNA_00798 at 861.866 kb on + strand, within CCNA_00798 at 861.874 kb on - strand, within CCNA_00798 at 861.874 kb on - strand, within CCNA_00798 at 861.896 kb on - strand, within CCNA_00798 at 861.912 kb on - strand, within CCNA_00798 at 861.927 kb on - strand, within CCNA_00798 at 861.945 kb on + strand, within CCNA_00798 at 861.951 kb on - strand, within CCNA_00798 at 861.973 kb on + strand, within CCNA_00798 at 861.981 kb on - strand, within CCNA_00798 at 861.981 kb on - strand, within CCNA_00798 at 861.981 kb on - strand, within CCNA_00798 at 861.983 kb on + strand, within CCNA_00798 at 862.013 kb on - strand, within CCNA_00798 at 862.013 kb on - strand, within CCNA_00798 at 862.013 kb on - strand, within CCNA_00798 at 862.049 kb on - strand, within CCNA_00798 at 862.058 kb on - strand, within CCNA_00798 at 862.063 kb on - strand, within CCNA_00798 at 862.065 kb on + strand, within CCNA_00798
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 858,598 - CCNA_00794 0.69 -1.0 858,625 + CCNA_00794 0.71 -1.1 858,633 - CCNA_00794 0.72 +1.4 858,633 - CCNA_00794 0.72 -1.9 858,730 + CCNA_00794 0.80 -0.7 858,730 + CCNA_00794 0.80 +0.3 858,738 - CCNA_00794 0.81 -1.1 858,769 - CCNA_00794 0.83 -0.2 858,791 + CCNA_00794 0.85 +0.6 858,791 + CCNA_00794 0.85 +0.1 858,799 - CCNA_00794 0.86 +0.0 858,806 - CCNA_00794 0.86 -0.0 858,856 - -0.1 858,918 + -1.1 858,938 - +0.3 859,000 + +0.7 859,010 + +1.4 859,017 + -0.7 859,032 + +0.4 859,064 + CCNA_00795 0.14 -0.0 859,064 + CCNA_00795 0.14 +0.4 859,083 - CCNA_00795 0.17 -0.0 859,093 + CCNA_00795 0.19 +0.1 859,133 - CCNA_00795 0.25 +0.3 859,163 - CCNA_00795 0.30 -0.4 859,261 + CCNA_00795 0.46 -0.4 859,343 + CCNA_00795 0.60 +0.3 859,389 + CCNA_00795 0.67 -0.7 859,402 - CCNA_00795 0.69 -0.8 859,406 + CCNA_00795 0.70 -0.5 859,414 - CCNA_00795 0.71 +0.2 859,443 + CCNA_00795 0.76 +0.8 859,443 + CCNA_00795 0.76 +0.4 859,451 - CCNA_00795 0.77 +0.5 859,453 + CCNA_00795 0.78 -1.1 859,463 + CCNA_00795 0.79 -0.7 859,471 - CCNA_00795 0.81 +0.5 859,492 - CCNA_00795 0.84 +0.6 859,498 + CCNA_00795 0.85 -0.4 859,514 + CCNA_00795 0.88 +0.6 859,543 - -0.3 859,570 + +0.5 859,576 - +0.1 859,585 - +1.0 859,625 + -1.6 859,636 + +0.2 859,644 - +0.9 859,667 + +1.2 859,668 - +0.2 859,672 + +0.4 859,672 + -1.3 859,680 - +0.7 859,680 - -0.2 859,680 - -0.5 859,680 - +0.1 859,727 + -0.0 859,727 + -0.5 859,729 + -0.3 859,735 - CCNA_00796 0.10 +0.3 859,737 - CCNA_00796 0.10 +0.4 859,737 - CCNA_00796 0.10 +0.4 859,781 - CCNA_00796 0.13 +0.5 859,828 - CCNA_00796 0.17 +0.4 859,854 + CCNA_00796 0.18 +0.7 859,854 + CCNA_00796 0.18 -0.3 859,862 - CCNA_00796 0.19 +0.6 859,862 - CCNA_00796 0.19 +0.1 859,862 - CCNA_00796 0.19 -0.4 859,877 + CCNA_00796 0.20 +0.6 859,885 - CCNA_00796 0.20 +0.6 859,885 - CCNA_00796 0.20 -0.5 859,889 + CCNA_00796 0.21 +0.1 859,935 + CCNA_00796 0.24 +0.3 859,986 - CCNA_00796 0.27 +0.5 860,030 - CCNA_00796 0.30 +0.5 860,056 - CCNA_00796 0.32 +0.1 860,056 - CCNA_00796 0.32 -0.5 860,058 + CCNA_00796 0.32 -0.1 860,058 + CCNA_00796 0.32 +0.5 860,058 + CCNA_00796 0.32 -0.1 860,066 - CCNA_00796 0.33 +0.3 860,133 + CCNA_00796 0.37 +0.4 860,141 - CCNA_00796 0.38 +0.3 860,141 - CCNA_00796 0.38 +0.2 860,150 + CCNA_00796 0.38 +1.6 860,185 - CCNA_00796 0.41 -0.0 860,202 - CCNA_00796 0.42 +0.6 860,217 + CCNA_00796 0.43 -0.0 860,225 + CCNA_00796 0.43 -0.1 860,225 - CCNA_00796 0.43 -0.1 860,225 - CCNA_00796 0.43 +0.5 860,249 + CCNA_00796 0.45 -0.5 860,257 - CCNA_00796 0.45 -0.6 860,268 + CCNA_00796 0.46 +0.2 860,268 + CCNA_00796 0.46 +0.4 860,313 - CCNA_00796 0.49 -0.1 860,313 - CCNA_00796 0.49 -0.3 860,347 + CCNA_00796 0.51 +0.6 860,347 + CCNA_00796 0.51 -0.9 860,461 + CCNA_00796 0.59 +0.5 860,490 + CCNA_00796 0.61 -2.0 860,498 - CCNA_00796 0.62 +0.5 860,498 - CCNA_00796 0.62 +0.2 860,559 - CCNA_00796 0.66 +0.6 860,590 - CCNA_00796 0.68 -0.1 860,615 + CCNA_00796 0.69 +0.1 860,629 - CCNA_00796 0.70 -0.1 860,677 - CCNA_00796 0.74 +0.5 860,679 + CCNA_00796 0.74 +1.2 860,687 - CCNA_00796 0.74 -0.5 860,687 - CCNA_00796 0.74 -0.4 860,697 - CCNA_00796 0.75 +0.3 860,731 + CCNA_00796 0.77 -0.0 860,731 + CCNA_00796 0.77 -1.0 860,731 + CCNA_00796 0.77 +0.0 860,739 - CCNA_00796 0.78 -0.3 860,742 + CCNA_00796 0.78 -0.9 860,845 + CCNA_00796 0.85 +0.2 860,850 + CCNA_00796 0.85 -1.6 860,850 + CCNA_00796 0.85 +0.1 860,856 + CCNA_00796 0.86 +1.0 860,858 - CCNA_00796 0.86 -0.0 860,886 + CCNA_00796 0.88 +0.2 860,891 + CCNA_00796 0.88 -0.7 860,894 - CCNA_00796 0.88 +0.3 860,894 - CCNA_00796 0.88 +0.1 860,894 - CCNA_00796 0.88 -0.8 860,894 - CCNA_00796 0.88 +0.3 860,894 - CCNA_00796 0.88 +0.4 860,901 + CCNA_00796 0.89 -0.6 860,901 + CCNA_00796 0.89 -0.8 860,901 + CCNA_00796 0.89 -0.1 860,901 + CCNA_00796 0.89 +1.0 860,909 - CCNA_00796 0.89 -0.8 860,909 - CCNA_00796 0.89 +0.3 860,909 - CCNA_00796 0.89 +1.1 860,909 - CCNA_00796 0.89 -0.1 860,909 - CCNA_00796 0.89 +0.3 861,019 + +0.8 861,028 + -1.3 861,038 + +0.5 861,082 - -0.5 861,099 + -0.0 861,106 - -0.3 861,107 - +0.2 861,124 + -0.0 861,124 + +0.4 861,132 - -0.1 861,132 - -0.5 861,132 - +0.8 861,132 - -0.2 861,174 - +0.5 861,252 + CCNA_03940 0.69 +0.7 861,252 + CCNA_03940 0.69 +0.6 861,259 + CCNA_03940 0.75 +0.2 861,260 - CCNA_03940 0.76 +0.4 861,300 - -0.9 861,424 - +0.0 861,462 - CCNA_00798 0.11 -0.4 861,472 + CCNA_00798 0.11 -0.8 861,482 - CCNA_00798 0.12 -1.3 861,529 + CCNA_00798 0.15 -0.2 861,539 + CCNA_00798 0.15 -0.7 861,539 + CCNA_00798 0.15 +0.0 861,542 - CCNA_00798 0.16 -0.5 861,594 + CCNA_00798 0.19 +0.4 861,594 + CCNA_00798 0.19 -0.3 861,602 - CCNA_00798 0.19 -0.4 861,614 - CCNA_00798 0.20 +0.3 861,655 + CCNA_00798 0.23 -0.5 861,655 + CCNA_00798 0.23 -1.7 861,655 + CCNA_00798 0.23 -0.5 861,663 - CCNA_00798 0.23 -0.0 861,663 - CCNA_00798 0.23 -0.4 861,663 - CCNA_00798 0.23 +0.1 861,663 - CCNA_00798 0.23 +0.7 861,706 - CCNA_00798 0.26 +0.1 861,720 - CCNA_00798 0.27 +0.2 861,764 + CCNA_00798 0.29 +1.3 861,772 - CCNA_00798 0.30 +0.1 861,788 + CCNA_00798 0.31 +1.1 861,797 - CCNA_00798 0.31 +0.5 861,832 + CCNA_00798 0.34 +0.1 861,840 - CCNA_00798 0.34 +1.0 861,842 + CCNA_00798 0.34 +0.6 861,866 + CCNA_00798 0.36 +0.9 861,874 - CCNA_00798 0.36 -0.4 861,874 - CCNA_00798 0.36 -0.2 861,896 - CCNA_00798 0.38 -0.2 861,912 - CCNA_00798 0.39 +0.0 861,927 - CCNA_00798 0.40 +0.2 861,945 + CCNA_00798 0.41 +0.6 861,951 - CCNA_00798 0.41 +0.5 861,973 + CCNA_00798 0.42 +1.2 861,981 - CCNA_00798 0.43 +1.4 861,981 - CCNA_00798 0.43 +0.2 861,981 - CCNA_00798 0.43 +0.4 861,983 + CCNA_00798 0.43 -0.4 862,013 - CCNA_00798 0.45 +0.1 862,013 - CCNA_00798 0.45 +0.1 862,013 - CCNA_00798 0.45 +0.6 862,049 - CCNA_00798 0.47 +0.1 862,058 - CCNA_00798 0.48 +1.0 862,063 - CCNA_00798 0.48 +0.1 862,065 + CCNA_00798 0.48 -0.3
Or see this region's nucleotide sequence