Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03400 and AO353_03405 are separated by 130 nucleotides AO353_03405 and AO353_03410 overlap by 11 nucleotides AO353_03410 and AO353_03415 are separated by 206 nucleotides
AO353_03400: AO353_03400 - D-mannose isomerase (EC 5.3.1.7) <small>(from data)</small>, at 724,073 to 725,332
_03400
AO353_03405: AO353_03405 - histidine kinase, at 725,463 to 726,926
_03405
AO353_03410: AO353_03410 - chemotaxis protein CheY, at 726,916 to 727,647
_03410
AO353_03415: AO353_03415 - glucokinase, at 727,854 to 728,804
_03415
Position (kb) 725
726
727 Strain fitness (log2 ratio) -2
-1
0
1
2 at 724.587 kb on + strand, within AO353_03400 at 724.587 kb on + strand, within AO353_03400 at 724.588 kb on - strand, within AO353_03400 at 724.588 kb on - strand, within AO353_03400 at 724.623 kb on + strand, within AO353_03400 at 724.624 kb on - strand, within AO353_03400 at 724.837 kb on + strand, within AO353_03400 at 724.838 kb on - strand, within AO353_03400 at 724.980 kb on + strand, within AO353_03400 at 724.980 kb on + strand, within AO353_03400 at 724.981 kb on - strand, within AO353_03400 at 724.981 kb on - strand, within AO353_03400 at 725.352 kb on + strand at 725.352 kb on + strand at 725.353 kb on - strand at 725.369 kb on + strand at 725.370 kb on - strand at 725.411 kb on + strand at 725.411 kb on + strand at 725.412 kb on - strand at 725.412 kb on - strand at 725.412 kb on - strand at 725.476 kb on - strand at 725.541 kb on - strand at 725.675 kb on + strand, within AO353_03405 at 725.675 kb on + strand, within AO353_03405 at 725.722 kb on + strand, within AO353_03405 at 725.842 kb on + strand, within AO353_03405 at 725.842 kb on + strand, within AO353_03405 at 725.843 kb on - strand, within AO353_03405 at 725.865 kb on + strand, within AO353_03405 at 725.865 kb on + strand, within AO353_03405 at 725.866 kb on - strand, within AO353_03405 at 726.113 kb on + strand, within AO353_03405 at 726.114 kb on - strand, within AO353_03405 at 726.251 kb on + strand, within AO353_03405 at 726.329 kb on + strand, within AO353_03405 at 726.329 kb on + strand, within AO353_03405 at 726.329 kb on + strand, within AO353_03405 at 726.329 kb on + strand, within AO353_03405 at 726.329 kb on + strand, within AO353_03405 at 726.331 kb on + strand, within AO353_03405 at 726.332 kb on - strand, within AO353_03405 at 726.358 kb on + strand, within AO353_03405 at 726.358 kb on + strand, within AO353_03405 at 726.358 kb on + strand, within AO353_03405 at 726.358 kb on + strand, within AO353_03405 at 726.359 kb on - strand, within AO353_03405 at 726.359 kb on - strand, within AO353_03405 at 726.359 kb on - strand, within AO353_03405 at 726.359 kb on - strand, within AO353_03405 at 726.359 kb on - strand, within AO353_03405 at 726.434 kb on - strand, within AO353_03405 at 726.434 kb on - strand, within AO353_03405 at 726.521 kb on + strand, within AO353_03405 at 726.521 kb on + strand, within AO353_03405 at 726.522 kb on - strand, within AO353_03405 at 726.522 kb on - strand, within AO353_03405 at 726.522 kb on - strand, within AO353_03405 at 726.522 kb on - strand, within AO353_03405 at 726.522 kb on - strand, within AO353_03405 at 726.522 kb on - strand, within AO353_03405 at 726.715 kb on + strand, within AO353_03405 at 726.715 kb on + strand, within AO353_03405 at 726.715 kb on + strand, within AO353_03405 at 726.715 kb on + strand, within AO353_03405 at 726.715 kb on + strand, within AO353_03405 at 726.715 kb on + strand, within AO353_03405 at 726.937 kb on + strand at 726.937 kb on + strand at 726.938 kb on - strand at 726.938 kb on - strand at 726.938 kb on - strand at 727.280 kb on - strand, within AO353_03410 at 727.280 kb on - strand, within AO353_03410 at 727.334 kb on + strand, within AO353_03410 at 727.335 kb on - strand, within AO353_03410 at 727.577 kb on + strand at 727.577 kb on + strand at 727.578 kb on - strand at 727.578 kb on - strand at 727.578 kb on - strand at 727.578 kb on - strand at 727.578 kb on - strand at 727.578 kb on - strand at 727.597 kb on + strand at 727.597 kb on + strand at 727.667 kb on + strand at 727.667 kb on + strand at 727.667 kb on + strand at 727.667 kb on + strand at 727.667 kb on + strand at 727.683 kb on + strand at 727.683 kb on + strand at 727.684 kb on - strand at 727.684 kb on - strand at 727.852 kb on + strand at 727.852 kb on + strand at 727.852 kb on + strand at 727.852 kb on + strand at 727.897 kb on + strand at 727.898 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 724,587 + AO353_03400 0.41 +0.4 724,587 + AO353_03400 0.41 -0.4 724,588 - AO353_03400 0.41 -0.7 724,588 - AO353_03400 0.41 +0.8 724,623 + AO353_03400 0.44 +0.9 724,624 - AO353_03400 0.44 +0.2 724,837 + AO353_03400 0.61 -0.1 724,838 - AO353_03400 0.61 -0.1 724,980 + AO353_03400 0.72 +0.5 724,980 + AO353_03400 0.72 -0.4 724,981 - AO353_03400 0.72 +0.1 724,981 - AO353_03400 0.72 +0.1 725,352 + +1.1 725,352 + +0.2 725,353 - +0.1 725,369 + +0.3 725,370 - -0.2 725,411 + +0.8 725,411 + +0.9 725,412 - -0.9 725,412 - +1.0 725,412 - +1.0 725,476 - +0.0 725,541 - -0.2 725,675 + AO353_03405 0.14 +0.6 725,675 + AO353_03405 0.14 +0.6 725,722 + AO353_03405 0.18 +0.9 725,842 + AO353_03405 0.26 +1.5 725,842 + AO353_03405 0.26 +0.2 725,843 - AO353_03405 0.26 +1.1 725,865 + AO353_03405 0.27 +0.9 725,865 + AO353_03405 0.27 +0.4 725,866 - AO353_03405 0.28 +0.2 726,113 + AO353_03405 0.44 +2.2 726,114 - AO353_03405 0.44 +0.8 726,251 + AO353_03405 0.54 +0.3 726,329 + AO353_03405 0.59 +0.9 726,329 + AO353_03405 0.59 -0.4 726,329 + AO353_03405 0.59 -0.1 726,329 + AO353_03405 0.59 +0.8 726,329 + AO353_03405 0.59 +2.0 726,331 + AO353_03405 0.59 -0.9 726,332 - AO353_03405 0.59 +0.4 726,358 + AO353_03405 0.61 +0.6 726,358 + AO353_03405 0.61 +0.9 726,358 + AO353_03405 0.61 +0.2 726,358 + AO353_03405 0.61 +1.4 726,359 - AO353_03405 0.61 +0.8 726,359 - AO353_03405 0.61 +0.6 726,359 - AO353_03405 0.61 +0.6 726,359 - AO353_03405 0.61 +0.6 726,359 - AO353_03405 0.61 -0.6 726,434 - AO353_03405 0.66 +0.2 726,434 - AO353_03405 0.66 +1.0 726,521 + AO353_03405 0.72 +1.6 726,521 + AO353_03405 0.72 +0.0 726,522 - AO353_03405 0.72 +0.8 726,522 - AO353_03405 0.72 +1.0 726,522 - AO353_03405 0.72 +1.3 726,522 - AO353_03405 0.72 +0.9 726,522 - AO353_03405 0.72 -0.6 726,522 - AO353_03405 0.72 +0.7 726,715 + AO353_03405 0.86 +0.2 726,715 + AO353_03405 0.86 +2.6 726,715 + AO353_03405 0.86 +0.7 726,715 + AO353_03405 0.86 -0.2 726,715 + AO353_03405 0.86 +0.6 726,715 + AO353_03405 0.86 +1.4 726,937 + +1.2 726,937 + +0.0 726,938 - -0.9 726,938 - -0.2 726,938 - +0.2 727,280 - AO353_03410 0.50 +0.0 727,280 - AO353_03410 0.50 -0.1 727,334 + AO353_03410 0.57 +0.3 727,335 - AO353_03410 0.57 -0.7 727,577 + +1.5 727,577 + +1.8 727,578 - -0.6 727,578 - -1.2 727,578 - -0.5 727,578 - -0.5 727,578 - +1.8 727,578 - +0.1 727,597 + +1.4 727,597 + -1.2 727,667 + +0.2 727,667 + +0.4 727,667 + +0.0 727,667 + +0.9 727,667 + +1.3 727,683 + +0.3 727,683 + +1.1 727,684 - -1.5 727,684 - +0.5 727,852 + -1.8 727,852 + +1.2 727,852 + +0.3 727,852 + +1.3 727,897 + +1.2 727,898 - +0.3
Or see this region's nucleotide sequence