Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06680

Experiment: D-Ribose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS06675 and ABID97_RS06680 are separated by 0 nucleotidesABID97_RS06680 and ABID97_RS06685 are separated by 69 nucleotidesABID97_RS06685 and ABID97_RS06690 are separated by 28 nucleotides ABID97_RS06675: ABID97_RS06675 - alpha-ketoacid dehydrogenase subunit beta, at 1,408,379 to 1,409,392 _RS06675 ABID97_RS06680: ABID97_RS06680 - dihydrolipoamide acetyltransferase family protein, at 1,409,393 to 1,410,643 _RS06680 ABID97_RS06685: ABID97_RS06685 - hypothetical protein, at 1,410,713 to 1,411,090 _RS06685 ABID97_RS06690: ABID97_RS06690 - four-helix bundle copper-binding protein, at 1,411,119 to 1,411,448 _RS06690 Position (kb) 1409 1410 1411Strain fitness (log2 ratio) -1 0 1 2at 1408.457 kb on + strandat 1408.520 kb on + strand, within ABID97_RS06675at 1408.521 kb on - strand, within ABID97_RS06675at 1408.521 kb on - strand, within ABID97_RS06675at 1408.521 kb on - strand, within ABID97_RS06675at 1408.596 kb on - strand, within ABID97_RS06675at 1408.596 kb on - strand, within ABID97_RS06675at 1408.596 kb on - strand, within ABID97_RS06675at 1408.634 kb on + strand, within ABID97_RS06675at 1408.635 kb on - strand, within ABID97_RS06675at 1408.635 kb on - strand, within ABID97_RS06675at 1408.635 kb on - strand, within ABID97_RS06675at 1408.748 kb on + strand, within ABID97_RS06675at 1408.748 kb on + strand, within ABID97_RS06675at 1408.749 kb on - strand, within ABID97_RS06675at 1408.907 kb on + strand, within ABID97_RS06675at 1408.908 kb on - strand, within ABID97_RS06675at 1408.908 kb on - strand, within ABID97_RS06675at 1408.908 kb on - strand, within ABID97_RS06675at 1408.988 kb on + strand, within ABID97_RS06675at 1408.988 kb on + strand, within ABID97_RS06675at 1408.989 kb on - strand, within ABID97_RS06675at 1408.989 kb on - strand, within ABID97_RS06675at 1408.991 kb on + strand, within ABID97_RS06675at 1408.991 kb on + strand, within ABID97_RS06675at 1408.991 kb on + strand, within ABID97_RS06675at 1408.991 kb on + strand, within ABID97_RS06675at 1408.991 kb on + strand, within ABID97_RS06675at 1408.992 kb on - strand, within ABID97_RS06675at 1409.054 kb on + strand, within ABID97_RS06675at 1409.055 kb on - strand, within ABID97_RS06675at 1409.055 kb on - strand, within ABID97_RS06675at 1409.055 kb on - strand, within ABID97_RS06675at 1409.336 kb on + strandat 1409.337 kb on - strandat 1409.719 kb on - strand, within ABID97_RS06680at 1410.035 kb on + strand, within ABID97_RS06680at 1410.035 kb on + strand, within ABID97_RS06680at 1410.035 kb on + strand, within ABID97_RS06680at 1410.035 kb on + strand, within ABID97_RS06680at 1410.035 kb on + strand, within ABID97_RS06680at 1410.036 kb on - strand, within ABID97_RS06680at 1410.036 kb on - strand, within ABID97_RS06680at 1410.036 kb on - strand, within ABID97_RS06680at 1411.610 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
remove
1,408,457 + +0.4
1,408,520 + ABID97_RS06675 0.14 +0.0
1,408,521 - ABID97_RS06675 0.14 +0.4
1,408,521 - ABID97_RS06675 0.14 -0.2
1,408,521 - ABID97_RS06675 0.14 +0.3
1,408,596 - ABID97_RS06675 0.21 -0.5
1,408,596 - ABID97_RS06675 0.21 +0.4
1,408,596 - ABID97_RS06675 0.21 +0.2
1,408,634 + ABID97_RS06675 0.25 -0.0
1,408,635 - ABID97_RS06675 0.25 +0.5
1,408,635 - ABID97_RS06675 0.25 +0.0
1,408,635 - ABID97_RS06675 0.25 +0.3
1,408,748 + ABID97_RS06675 0.36 +0.4
1,408,748 + ABID97_RS06675 0.36 +0.3
1,408,749 - ABID97_RS06675 0.36 +0.4
1,408,907 + ABID97_RS06675 0.52 +0.7
1,408,908 - ABID97_RS06675 0.52 +0.1
1,408,908 - ABID97_RS06675 0.52 +0.1
1,408,908 - ABID97_RS06675 0.52 -0.1
1,408,988 + ABID97_RS06675 0.60 -0.6
1,408,988 + ABID97_RS06675 0.60 +0.1
1,408,989 - ABID97_RS06675 0.60 -0.5
1,408,989 - ABID97_RS06675 0.60 +0.2
1,408,991 + ABID97_RS06675 0.60 +0.4
1,408,991 + ABID97_RS06675 0.60 +0.8
1,408,991 + ABID97_RS06675 0.60 -1.0
1,408,991 + ABID97_RS06675 0.60 +0.2
1,408,991 + ABID97_RS06675 0.60 -0.6
1,408,992 - ABID97_RS06675 0.60 +0.3
1,409,054 + ABID97_RS06675 0.67 +0.8
1,409,055 - ABID97_RS06675 0.67 +2.0
1,409,055 - ABID97_RS06675 0.67 +0.6
1,409,055 - ABID97_RS06675 0.67 -0.6
1,409,336 + +0.3
1,409,337 - +0.2
1,409,719 - ABID97_RS06680 0.26 +0.4
1,410,035 + ABID97_RS06680 0.51 -0.1
1,410,035 + ABID97_RS06680 0.51 -0.0
1,410,035 + ABID97_RS06680 0.51 -0.7
1,410,035 + ABID97_RS06680 0.51 -0.1
1,410,035 + ABID97_RS06680 0.51 +0.2
1,410,036 - ABID97_RS06680 0.51 -0.6
1,410,036 - ABID97_RS06680 0.51 -0.6
1,410,036 - ABID97_RS06680 0.51 -0.2
1,411,610 + +0.2

Or see this region's nucleotide sequence