Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4118

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4117 and EX28DRAFT_4118 overlap by 1 nucleotidesEX28DRAFT_4118 and EX28DRAFT_4119 are separated by 18 nucleotides EX28DRAFT_4117: EX28DRAFT_4117 - glucose-1-phosphate adenylyltransferase, at 90,334 to 91,629 _4117 EX28DRAFT_4118: EX28DRAFT_4118 - glycogen/starch synthase, ADP-glucose type, at 91,629 to 93,062 _4118 EX28DRAFT_4119: EX28DRAFT_4119 - glycogen/starch/alpha-glucan phosphorylases, at 93,081 to 95,528 _4119 Position (kb) 91 92 93 94Strain fitness (log2 ratio) -1 0 1 2at 90.737 kb on - strand, within EX28DRAFT_4117at 90.762 kb on + strand, within EX28DRAFT_4117at 90.762 kb on + strand, within EX28DRAFT_4117at 90.763 kb on - strand, within EX28DRAFT_4117at 90.766 kb on + strand, within EX28DRAFT_4117at 90.766 kb on + strand, within EX28DRAFT_4117at 90.766 kb on + strand, within EX28DRAFT_4117at 90.766 kb on + strand, within EX28DRAFT_4117at 90.766 kb on + strand, within EX28DRAFT_4117at 90.766 kb on + strand, within EX28DRAFT_4117at 90.767 kb on - strand, within EX28DRAFT_4117at 90.767 kb on - strand, within EX28DRAFT_4117at 90.767 kb on - strand, within EX28DRAFT_4117at 90.767 kb on - strand, within EX28DRAFT_4117at 90.767 kb on - strand, within EX28DRAFT_4117at 90.767 kb on - strand, within EX28DRAFT_4117at 90.778 kb on + strand, within EX28DRAFT_4117at 90.979 kb on + strand, within EX28DRAFT_4117at 90.979 kb on + strand, within EX28DRAFT_4117at 90.980 kb on - strand, within EX28DRAFT_4117at 90.997 kb on + strand, within EX28DRAFT_4117at 90.997 kb on + strand, within EX28DRAFT_4117at 90.997 kb on + strand, within EX28DRAFT_4117at 90.998 kb on - strand, within EX28DRAFT_4117at 91.004 kb on - strand, within EX28DRAFT_4117at 91.096 kb on + strand, within EX28DRAFT_4117at 91.227 kb on + strand, within EX28DRAFT_4117at 91.227 kb on + strand, within EX28DRAFT_4117at 91.231 kb on + strand, within EX28DRAFT_4117at 91.231 kb on + strand, within EX28DRAFT_4117at 91.232 kb on - strand, within EX28DRAFT_4117at 91.232 kb on - strand, within EX28DRAFT_4117at 91.232 kb on - strand, within EX28DRAFT_4117at 91.232 kb on - strand, within EX28DRAFT_4117at 91.351 kb on - strand, within EX28DRAFT_4117at 91.413 kb on + strand, within EX28DRAFT_4117at 91.413 kb on + strand, within EX28DRAFT_4117at 91.414 kb on - strand, within EX28DRAFT_4117at 91.580 kb on + strandat 91.639 kb on + strandat 91.639 kb on + strandat 91.645 kb on + strandat 91.645 kb on + strandat 91.645 kb on + strandat 91.645 kb on + strandat 91.645 kb on + strandat 91.645 kb on + strandat 91.645 kb on + strandat 91.646 kb on - strandat 91.646 kb on - strandat 91.646 kb on - strandat 91.646 kb on - strandat 91.646 kb on - strandat 91.646 kb on - strandat 91.646 kb on - strandat 91.848 kb on + strand, within EX28DRAFT_4118at 91.848 kb on + strand, within EX28DRAFT_4118at 91.848 kb on + strand, within EX28DRAFT_4118at 91.848 kb on + strand, within EX28DRAFT_4118at 91.849 kb on - strand, within EX28DRAFT_4118at 91.849 kb on - strand, within EX28DRAFT_4118at 91.849 kb on - strand, within EX28DRAFT_4118at 91.888 kb on + strand, within EX28DRAFT_4118at 91.888 kb on + strand, within EX28DRAFT_4118at 91.889 kb on - strand, within EX28DRAFT_4118at 91.890 kb on + strand, within EX28DRAFT_4118at 91.919 kb on + strand, within EX28DRAFT_4118at 91.936 kb on - strand, within EX28DRAFT_4118at 92.111 kb on + strand, within EX28DRAFT_4118at 92.133 kb on + strand, within EX28DRAFT_4118at 92.133 kb on + strand, within EX28DRAFT_4118at 92.133 kb on + strand, within EX28DRAFT_4118at 92.133 kb on + strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.136 kb on + strand, within EX28DRAFT_4118at 92.137 kb on - strand, within EX28DRAFT_4118at 92.137 kb on - strand, within EX28DRAFT_4118at 92.179 kb on - strand, within EX28DRAFT_4118at 92.180 kb on + strand, within EX28DRAFT_4118at 92.239 kb on - strand, within EX28DRAFT_4118at 92.249 kb on + strand, within EX28DRAFT_4118at 92.249 kb on + strand, within EX28DRAFT_4118at 92.250 kb on - strand, within EX28DRAFT_4118at 92.250 kb on - strand, within EX28DRAFT_4118at 92.250 kb on - strand, within EX28DRAFT_4118at 92.250 kb on - strand, within EX28DRAFT_4118at 92.272 kb on - strand, within EX28DRAFT_4118at 92.578 kb on + strand, within EX28DRAFT_4118at 92.906 kb on + strand, within EX28DRAFT_4118at 92.907 kb on - strand, within EX28DRAFT_4118at 93.009 kb on - strandat 93.009 kb on - strandat 93.045 kb on + strandat 93.060 kb on + strandat 93.060 kb on + strandat 93.060 kb on + strandat 93.080 kb on + strandat 93.095 kb on + strandat 93.095 kb on + strandat 93.095 kb on + strandat 93.100 kb on - strandat 93.147 kb on + strandat 93.185 kb on - strandat 93.185 kb on - strandat 93.239 kb on - strandat 93.239 kb on - strandat 93.301 kb on - strandat 93.301 kb on - strandat 93.301 kb on - strandat 93.359 kb on + strand, within EX28DRAFT_4119at 93.359 kb on + strand, within EX28DRAFT_4119at 93.360 kb on - strand, within EX28DRAFT_4119at 93.360 kb on - strand, within EX28DRAFT_4119at 93.401 kb on - strand, within EX28DRAFT_4119at 93.401 kb on - strand, within EX28DRAFT_4119at 93.401 kb on - strand, within EX28DRAFT_4119at 93.406 kb on + strand, within EX28DRAFT_4119at 93.406 kb on + strand, within EX28DRAFT_4119at 93.542 kb on + strand, within EX28DRAFT_4119at 93.542 kb on + strand, within EX28DRAFT_4119at 93.542 kb on + strand, within EX28DRAFT_4119at 93.543 kb on - strand, within EX28DRAFT_4119at 93.543 kb on - strand, within EX28DRAFT_4119at 93.591 kb on + strand, within EX28DRAFT_4119at 93.623 kb on + strand, within EX28DRAFT_4119at 93.643 kb on - strand, within EX28DRAFT_4119at 93.834 kb on + strand, within EX28DRAFT_4119at 93.835 kb on - strand, within EX28DRAFT_4119at 93.855 kb on - strand, within EX28DRAFT_4119at 93.906 kb on + strand, within EX28DRAFT_4119at 93.906 kb on + strand, within EX28DRAFT_4119at 93.907 kb on - strand, within EX28DRAFT_4119at 93.907 kb on - strand, within EX28DRAFT_4119at 94.002 kb on + strand, within EX28DRAFT_4119at 94.003 kb on - strand, within EX28DRAFT_4119

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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90,737 - EX28DRAFT_4117 0.31 +0.3
90,762 + EX28DRAFT_4117 0.33 +0.2
90,762 + EX28DRAFT_4117 0.33 -0.2
90,763 - EX28DRAFT_4117 0.33 +0.3
90,766 + EX28DRAFT_4117 0.33 -0.1
90,766 + EX28DRAFT_4117 0.33 +0.2
90,766 + EX28DRAFT_4117 0.33 +0.4
90,766 + EX28DRAFT_4117 0.33 -0.2
90,766 + EX28DRAFT_4117 0.33 +1.4
90,766 + EX28DRAFT_4117 0.33 +0.2
90,767 - EX28DRAFT_4117 0.33 +1.0
90,767 - EX28DRAFT_4117 0.33 +0.7
90,767 - EX28DRAFT_4117 0.33 +0.8
90,767 - EX28DRAFT_4117 0.33 +0.4
90,767 - EX28DRAFT_4117 0.33 +0.4
90,767 - EX28DRAFT_4117 0.33 +1.2
90,778 + EX28DRAFT_4117 0.34 -0.1
90,979 + EX28DRAFT_4117 0.50 +0.4
90,979 + EX28DRAFT_4117 0.50 +0.3
90,980 - EX28DRAFT_4117 0.50 -0.0
90,997 + EX28DRAFT_4117 0.51 -0.1
90,997 + EX28DRAFT_4117 0.51 +0.5
90,997 + EX28DRAFT_4117 0.51 +0.3
90,998 - EX28DRAFT_4117 0.51 +0.6
91,004 - EX28DRAFT_4117 0.52 -0.3
91,096 + EX28DRAFT_4117 0.59 +0.5
91,227 + EX28DRAFT_4117 0.69 +0.6
91,227 + EX28DRAFT_4117 0.69 +0.6
91,231 + EX28DRAFT_4117 0.69 -0.0
91,231 + EX28DRAFT_4117 0.69 -1.4
91,232 - EX28DRAFT_4117 0.69 +0.1
91,232 - EX28DRAFT_4117 0.69 -0.3
91,232 - EX28DRAFT_4117 0.69 +0.4
91,232 - EX28DRAFT_4117 0.69 +0.5
91,351 - EX28DRAFT_4117 0.78 +0.2
91,413 + EX28DRAFT_4117 0.83 -0.1
91,413 + EX28DRAFT_4117 0.83 +1.0
91,414 - EX28DRAFT_4117 0.83 +0.5
91,580 + -0.7
91,639 + +0.5
91,639 + +0.5
91,645 + -0.7
91,645 + +0.0
91,645 + +0.1
91,645 + -0.3
91,645 + +0.6
91,645 + +0.6
91,645 + +0.5
91,646 - +1.4
91,646 - +0.1
91,646 - -0.9
91,646 - +0.5
91,646 - -0.0
91,646 - +0.2
91,646 - +1.3
91,848 + EX28DRAFT_4118 0.15 +0.5
91,848 + EX28DRAFT_4118 0.15 +0.5
91,848 + EX28DRAFT_4118 0.15 +0.1
91,848 + EX28DRAFT_4118 0.15 +0.6
91,849 - EX28DRAFT_4118 0.15 +0.3
91,849 - EX28DRAFT_4118 0.15 +0.2
91,849 - EX28DRAFT_4118 0.15 +1.7
91,888 + EX28DRAFT_4118 0.18 -0.3
91,888 + EX28DRAFT_4118 0.18 -0.0
91,889 - EX28DRAFT_4118 0.18 +0.7
91,890 + EX28DRAFT_4118 0.18 +0.6
91,919 + EX28DRAFT_4118 0.20 +0.4
91,936 - EX28DRAFT_4118 0.21 +0.6
92,111 + EX28DRAFT_4118 0.34 +0.2
92,133 + EX28DRAFT_4118 0.35 +0.2
92,133 + EX28DRAFT_4118 0.35 -0.4
92,133 + EX28DRAFT_4118 0.35 -0.1
92,133 + EX28DRAFT_4118 0.35 -0.1
92,134 - EX28DRAFT_4118 0.35 +0.9
92,134 - EX28DRAFT_4118 0.35 +0.5
92,134 - EX28DRAFT_4118 0.35 -0.5
92,134 - EX28DRAFT_4118 0.35 +0.7
92,134 - EX28DRAFT_4118 0.35 -0.4
92,134 - EX28DRAFT_4118 0.35 -0.2
92,134 - EX28DRAFT_4118 0.35 +0.2
92,134 - EX28DRAFT_4118 0.35 +0.7
92,136 + EX28DRAFT_4118 0.35 +0.2
92,137 - EX28DRAFT_4118 0.35 +0.9
92,137 - EX28DRAFT_4118 0.35 +0.4
92,179 - EX28DRAFT_4118 0.38 -0.0
92,180 + EX28DRAFT_4118 0.38 +0.6
92,239 - EX28DRAFT_4118 0.43 -0.4
92,249 + EX28DRAFT_4118 0.43 +1.0
92,249 + EX28DRAFT_4118 0.43 +0.6
92,250 - EX28DRAFT_4118 0.43 +0.2
92,250 - EX28DRAFT_4118 0.43 +1.1
92,250 - EX28DRAFT_4118 0.43 +0.5
92,250 - EX28DRAFT_4118 0.43 +1.0
92,272 - EX28DRAFT_4118 0.45 +0.7
92,578 + EX28DRAFT_4118 0.66 -0.0
92,906 + EX28DRAFT_4118 0.89 +0.8
92,907 - EX28DRAFT_4118 0.89 +0.2
93,009 - -1.0
93,009 - +1.3
93,045 + +1.1
93,060 + +0.4
93,060 + +1.4
93,060 + -0.4
93,080 + -0.4
93,095 + +0.2
93,095 + +1.1
93,095 + -1.1
93,100 - -0.0
93,147 + -0.3
93,185 - -1.3
93,185 - +0.4
93,239 - +2.5
93,239 - +0.7
93,301 - -0.9
93,301 - -0.1
93,301 - +1.4
93,359 + EX28DRAFT_4119 0.11 +0.3
93,359 + EX28DRAFT_4119 0.11 -0.6
93,360 - EX28DRAFT_4119 0.11 +0.1
93,360 - EX28DRAFT_4119 0.11 -0.8
93,401 - EX28DRAFT_4119 0.13 -0.4
93,401 - EX28DRAFT_4119 0.13 +2.0
93,401 - EX28DRAFT_4119 0.13 -0.8
93,406 + EX28DRAFT_4119 0.13 -0.3
93,406 + EX28DRAFT_4119 0.13 -0.4
93,542 + EX28DRAFT_4119 0.19 +1.0
93,542 + EX28DRAFT_4119 0.19 +0.3
93,542 + EX28DRAFT_4119 0.19 +0.4
93,543 - EX28DRAFT_4119 0.19 -0.5
93,543 - EX28DRAFT_4119 0.19 +0.6
93,591 + EX28DRAFT_4119 0.21 +0.1
93,623 + EX28DRAFT_4119 0.22 +0.7
93,643 - EX28DRAFT_4119 0.23 +1.0
93,834 + EX28DRAFT_4119 0.31 -0.5
93,835 - EX28DRAFT_4119 0.31 -0.2
93,855 - EX28DRAFT_4119 0.32 +0.0
93,906 + EX28DRAFT_4119 0.34 -0.5
93,906 + EX28DRAFT_4119 0.34 +0.4
93,907 - EX28DRAFT_4119 0.34 +0.6
93,907 - EX28DRAFT_4119 0.34 -0.4
94,002 + EX28DRAFT_4119 0.38 +2.0
94,003 - EX28DRAFT_4119 0.38 -0.0

Or see this region's nucleotide sequence