Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4271

Experiment: Green bean; epiphytic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4270 and Psyr_4271 are separated by 104 nucleotidesPsyr_4271 and Psyr_4272 are separated by 95 nucleotidesPsyr_4272 and Psyr_4273 are separated by 27 nucleotides Psyr_4270: Psyr_4270 - serine hydroxymethyltransferase, at 5,094,122 to 5,095,375 _4270 Psyr_4271: Psyr_4271 - Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K, at 5,095,480 to 5,096,457 _4271 Psyr_4272: Psyr_4272 - Protein of unknown function DUF466, at 5,096,553 to 5,096,750 _4272 Psyr_4273: Psyr_4273 - Carbon starvation protein CstA, at 5,096,778 to 5,098,853 _4273 Position (kb) 5095 5096 5097Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5094.539 kb on + strand, within Psyr_4270at 5094.540 kb on - strand, within Psyr_4270at 5094.585 kb on - strand, within Psyr_4270at 5094.651 kb on - strand, within Psyr_4270at 5094.708 kb on - strand, within Psyr_4270at 5094.708 kb on - strand, within Psyr_4270at 5094.708 kb on - strand, within Psyr_4270at 5094.977 kb on + strand, within Psyr_4270at 5095.388 kb on - strandat 5095.388 kb on - strandat 5095.396 kb on + strandat 5095.489 kb on + strandat 5095.489 kb on + strandat 5095.489 kb on + strandat 5095.490 kb on - strandat 5095.490 kb on - strandat 5095.490 kb on - strandat 5095.667 kb on + strand, within Psyr_4271at 5095.668 kb on - strand, within Psyr_4271at 5096.087 kb on + strand, within Psyr_4271at 5096.088 kb on - strand, within Psyr_4271at 5096.088 kb on - strand, within Psyr_4271at 5096.088 kb on - strand, within Psyr_4271at 5096.088 kb on - strand, within Psyr_4271at 5096.088 kb on - strand, within Psyr_4271at 5096.199 kb on + strand, within Psyr_4271at 5096.199 kb on + strand, within Psyr_4271at 5096.217 kb on - strand, within Psyr_4271at 5096.217 kb on - strand, within Psyr_4271at 5096.217 kb on - strand, within Psyr_4271at 5096.284 kb on + strand, within Psyr_4271at 5096.284 kb on + strand, within Psyr_4271at 5096.457 kb on + strandat 5096.457 kb on + strandat 5096.458 kb on - strandat 5096.536 kb on + strandat 5096.620 kb on + strand, within Psyr_4272at 5096.620 kb on + strand, within Psyr_4272at 5096.620 kb on + strand, within Psyr_4272at 5096.620 kb on + strand, within Psyr_4272at 5096.621 kb on - strand, within Psyr_4272at 5096.668 kb on + strand, within Psyr_4272at 5096.668 kb on + strand, within Psyr_4272at 5096.669 kb on - strand, within Psyr_4272at 5096.669 kb on - strand, within Psyr_4272at 5096.669 kb on - strand, within Psyr_4272at 5096.669 kb on - strand, within Psyr_4272at 5096.719 kb on + strand, within Psyr_4272at 5096.720 kb on - strand, within Psyr_4272at 5096.865 kb on - strandat 5096.872 kb on + strandat 5096.872 kb on + strandat 5096.873 kb on - strandat 5096.929 kb on + strandat 5096.929 kb on + strandat 5096.930 kb on - strandat 5097.010 kb on + strand, within Psyr_4273at 5097.010 kb on + strand, within Psyr_4273at 5097.010 kb on + strand, within Psyr_4273at 5097.011 kb on - strand, within Psyr_4273at 5097.011 kb on - strand, within Psyr_4273at 5097.011 kb on - strand, within Psyr_4273at 5097.036 kb on + strand, within Psyr_4273at 5097.128 kb on - strand, within Psyr_4273at 5097.203 kb on + strand, within Psyr_4273at 5097.220 kb on - strand, within Psyr_4273at 5097.220 kb on - strand, within Psyr_4273at 5097.224 kb on + strand, within Psyr_4273at 5097.224 kb on + strand, within Psyr_4273at 5097.224 kb on + strand, within Psyr_4273at 5097.224 kb on + strand, within Psyr_4273at 5097.224 kb on + strand, within Psyr_4273at 5097.224 kb on + strand, within Psyr_4273at 5097.225 kb on - strand, within Psyr_4273at 5097.225 kb on - strand, within Psyr_4273at 5097.225 kb on - strand, within Psyr_4273at 5097.268 kb on + strand, within Psyr_4273

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Per-strain Table

Position Strand Gene LocusTag Fraction Green bean; epiphytic
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5,094,539 + Psyr_4270 0.33 +0.2
5,094,540 - Psyr_4270 0.33 -1.8
5,094,585 - Psyr_4270 0.37 +1.2
5,094,651 - Psyr_4270 0.42 -0.8
5,094,708 - Psyr_4270 0.47 -2.1
5,094,708 - Psyr_4270 0.47 -0.4
5,094,708 - Psyr_4270 0.47 -0.4
5,094,977 + Psyr_4270 0.68 +0.2
5,095,388 - -0.4
5,095,388 - +0.7
5,095,396 + -0.1
5,095,489 + -0.1
5,095,489 + +0.2
5,095,489 + -0.5
5,095,490 - +0.6
5,095,490 - +0.9
5,095,490 - -0.7
5,095,667 + Psyr_4271 0.19 -1.1
5,095,668 - Psyr_4271 0.19 +0.1
5,096,087 + Psyr_4271 0.62 +0.3
5,096,088 - Psyr_4271 0.62 +0.2
5,096,088 - Psyr_4271 0.62 +0.4
5,096,088 - Psyr_4271 0.62 +1.0
5,096,088 - Psyr_4271 0.62 +1.6
5,096,088 - Psyr_4271 0.62 -0.1
5,096,199 + Psyr_4271 0.74 +3.4
5,096,199 + Psyr_4271 0.74 -0.3
5,096,217 - Psyr_4271 0.75 +1.2
5,096,217 - Psyr_4271 0.75 -1.8
5,096,217 - Psyr_4271 0.75 -0.1
5,096,284 + Psyr_4271 0.82 -0.4
5,096,284 + Psyr_4271 0.82 -0.2
5,096,457 + -0.1
5,096,457 + +0.5
5,096,458 - -0.5
5,096,536 + +0.2
5,096,620 + Psyr_4272 0.34 +1.2
5,096,620 + Psyr_4272 0.34 +0.0
5,096,620 + Psyr_4272 0.34 +0.6
5,096,620 + Psyr_4272 0.34 -2.4
5,096,621 - Psyr_4272 0.34 -1.3
5,096,668 + Psyr_4272 0.58 +0.2
5,096,668 + Psyr_4272 0.58 +1.0
5,096,669 - Psyr_4272 0.59 -0.9
5,096,669 - Psyr_4272 0.59 -1.0
5,096,669 - Psyr_4272 0.59 -0.1
5,096,669 - Psyr_4272 0.59 +1.6
5,096,719 + Psyr_4272 0.84 -1.8
5,096,720 - Psyr_4272 0.84 -0.6
5,096,865 - -0.4
5,096,872 + +0.4
5,096,872 + +0.0
5,096,873 - +0.2
5,096,929 + +0.1
5,096,929 + +0.7
5,096,930 - +0.6
5,097,010 + Psyr_4273 0.11 -0.9
5,097,010 + Psyr_4273 0.11 +0.9
5,097,010 + Psyr_4273 0.11 +0.9
5,097,011 - Psyr_4273 0.11 -1.0
5,097,011 - Psyr_4273 0.11 +0.6
5,097,011 - Psyr_4273 0.11 +0.9
5,097,036 + Psyr_4273 0.12 -1.2
5,097,128 - Psyr_4273 0.17 -0.5
5,097,203 + Psyr_4273 0.20 +0.2
5,097,220 - Psyr_4273 0.21 -0.8
5,097,220 - Psyr_4273 0.21 +0.2
5,097,224 + Psyr_4273 0.21 +0.6
5,097,224 + Psyr_4273 0.21 -0.4
5,097,224 + Psyr_4273 0.21 +0.4
5,097,224 + Psyr_4273 0.21 +1.2
5,097,224 + Psyr_4273 0.21 +0.8
5,097,224 + Psyr_4273 0.21 +0.7
5,097,225 - Psyr_4273 0.22 -0.4
5,097,225 - Psyr_4273 0.22 -1.5
5,097,225 - Psyr_4273 0.22 +0.4
5,097,268 + Psyr_4273 0.24 -1.3

Or see this region's nucleotide sequence