Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1570

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1567 and EX28DRAFT_1568 overlap by 4 nucleotidesEX28DRAFT_1568 and EX28DRAFT_1569 are separated by 1 nucleotidesEX28DRAFT_1569 and EX28DRAFT_1570 overlap by 1 nucleotidesEX28DRAFT_1570 and EX28DRAFT_1571 are separated by 36 nucleotidesEX28DRAFT_1571 and EX28DRAFT_1572 are separated by 2 nucleotides EX28DRAFT_1567: EX28DRAFT_1567 - Bacteriophage related domain of unknown function, at 1,583,970 to 1,584,380 _1567 EX28DRAFT_1568: EX28DRAFT_1568 - hypothetical protein, at 1,584,377 to 1,584,961 _1568 EX28DRAFT_1569: EX28DRAFT_1569 - hypothetical protein, at 1,584,963 to 1,585,313 _1569 EX28DRAFT_1570: EX28DRAFT_1570 - hypothetical protein, at 1,585,313 to 1,585,795 _1570 EX28DRAFT_1571: EX28DRAFT_1571 - Bacterial Ig-like domain (group 1), at 1,585,832 to 1,586,110 _1571 EX28DRAFT_1572: EX28DRAFT_1572 - hypothetical protein, at 1,586,113 to 1,587,066 _1572 Position (kb) 1585 1586Strain fitness (log2 ratio) -2 -1 0 1at 1584.383 kb on - strandat 1584.441 kb on - strand, within EX28DRAFT_1568at 1584.513 kb on + strand, within EX28DRAFT_1568at 1584.513 kb on + strand, within EX28DRAFT_1568at 1584.514 kb on - strand, within EX28DRAFT_1568at 1584.517 kb on + strand, within EX28DRAFT_1568at 1584.552 kb on + strand, within EX28DRAFT_1568at 1584.662 kb on - strand, within EX28DRAFT_1568at 1584.662 kb on - strand, within EX28DRAFT_1568at 1584.774 kb on + strand, within EX28DRAFT_1568at 1584.774 kb on + strand, within EX28DRAFT_1568at 1584.774 kb on + strand, within EX28DRAFT_1568at 1584.775 kb on - strand, within EX28DRAFT_1568at 1584.775 kb on - strand, within EX28DRAFT_1568at 1584.790 kb on - strand, within EX28DRAFT_1568at 1584.884 kb on + strand, within EX28DRAFT_1568at 1584.884 kb on + strand, within EX28DRAFT_1568at 1584.885 kb on - strand, within EX28DRAFT_1568at 1584.949 kb on + strandat 1584.950 kb on - strandat 1584.964 kb on + strandat 1584.965 kb on - strandat 1584.965 kb on - strandat 1584.965 kb on - strandat 1584.965 kb on - strandat 1584.965 kb on - strandat 1585.025 kb on + strand, within EX28DRAFT_1569at 1585.246 kb on + strand, within EX28DRAFT_1569at 1585.246 kb on + strand, within EX28DRAFT_1569at 1585.247 kb on - strand, within EX28DRAFT_1569at 1585.271 kb on + strand, within EX28DRAFT_1569at 1585.271 kb on + strand, within EX28DRAFT_1569at 1585.271 kb on + strand, within EX28DRAFT_1569at 1585.333 kb on + strandat 1585.334 kb on - strandat 1585.345 kb on - strandat 1585.345 kb on - strandat 1585.429 kb on - strand, within EX28DRAFT_1570at 1585.429 kb on - strand, within EX28DRAFT_1570at 1585.540 kb on + strand, within EX28DRAFT_1570at 1585.641 kb on - strand, within EX28DRAFT_1570at 1585.789 kb on + strandat 1585.790 kb on - strandat 1586.139 kb on + strandat 1586.324 kb on + strand, within EX28DRAFT_1572at 1586.325 kb on - strand, within EX28DRAFT_1572at 1586.517 kb on - strand, within EX28DRAFT_1572at 1586.517 kb on - strand, within EX28DRAFT_1572at 1586.684 kb on + strand, within EX28DRAFT_1572at 1586.722 kb on + strand, within EX28DRAFT_1572at 1586.793 kb on - strand, within EX28DRAFT_1572

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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1,584,383 - +0.3
1,584,441 - EX28DRAFT_1568 0.11 +0.4
1,584,513 + EX28DRAFT_1568 0.23 +0.2
1,584,513 + EX28DRAFT_1568 0.23 +0.7
1,584,514 - EX28DRAFT_1568 0.23 -0.3
1,584,517 + EX28DRAFT_1568 0.24 +0.4
1,584,552 + EX28DRAFT_1568 0.30 +0.1
1,584,662 - EX28DRAFT_1568 0.49 -0.2
1,584,662 - EX28DRAFT_1568 0.49 -0.2
1,584,774 + EX28DRAFT_1568 0.68 +0.5
1,584,774 + EX28DRAFT_1568 0.68 -0.4
1,584,774 + EX28DRAFT_1568 0.68 +0.2
1,584,775 - EX28DRAFT_1568 0.68 -0.4
1,584,775 - EX28DRAFT_1568 0.68 -1.3
1,584,790 - EX28DRAFT_1568 0.71 -0.6
1,584,884 + EX28DRAFT_1568 0.87 +1.2
1,584,884 + EX28DRAFT_1568 0.87 +0.2
1,584,885 - EX28DRAFT_1568 0.87 +0.6
1,584,949 + +0.3
1,584,950 - +0.1
1,584,964 + +0.1
1,584,965 - +0.4
1,584,965 - +0.1
1,584,965 - -0.2
1,584,965 - +1.0
1,584,965 - +0.3
1,585,025 + EX28DRAFT_1569 0.18 +0.1
1,585,246 + EX28DRAFT_1569 0.81 -0.9
1,585,246 + EX28DRAFT_1569 0.81 +0.2
1,585,247 - EX28DRAFT_1569 0.81 +0.2
1,585,271 + EX28DRAFT_1569 0.88 +0.5
1,585,271 + EX28DRAFT_1569 0.88 +0.1
1,585,271 + EX28DRAFT_1569 0.88 +0.4
1,585,333 + +0.8
1,585,334 - -0.2
1,585,345 - -0.5
1,585,345 - -0.7
1,585,429 - EX28DRAFT_1570 0.24 -0.3
1,585,429 - EX28DRAFT_1570 0.24 +0.4
1,585,540 + EX28DRAFT_1570 0.47 -1.9
1,585,641 - EX28DRAFT_1570 0.68 -1.6
1,585,789 + +0.2
1,585,790 - -0.1
1,586,139 + +0.2
1,586,324 + EX28DRAFT_1572 0.22 +0.5
1,586,325 - EX28DRAFT_1572 0.22 +0.2
1,586,517 - EX28DRAFT_1572 0.42 -1.0
1,586,517 - EX28DRAFT_1572 0.42 +0.1
1,586,684 + EX28DRAFT_1572 0.60 -0.7
1,586,722 + EX28DRAFT_1572 0.64 +0.1
1,586,793 - EX28DRAFT_1572 0.71 -0.7

Or see this region's nucleotide sequence