Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15360

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15350 and ABID97_RS15355 overlap by 43 nucleotidesABID97_RS15355 and ABID97_RS15360 are separated by 43 nucleotidesABID97_RS15360 and ABID97_RS15365 overlap by 1 nucleotidesABID97_RS15365 and ABID97_RS15370 are separated by 43 nucleotides ABID97_RS15350: ABID97_RS15350 - NAD(P)/FAD-dependent oxidoreductase, at 3,175,771 to 3,176,847 _RS15350 ABID97_RS15355: ABID97_RS15355 - ferredoxin FdxA, at 3,176,805 to 3,177,134 _RS15355 ABID97_RS15360: ABID97_RS15360 - GTP-binding protein, at 3,177,178 to 3,178,518 _RS15360 ABID97_RS15365: ABID97_RS15365 - sulfate adenylyltransferase subunit CysD, at 3,178,518 to 3,179,471 _RS15365 ABID97_RS15370: ABID97_RS15370 - phosphoadenosine phosphosulfate reductase family protein, at 3,179,515 to 3,180,147 _RS15370 Position (kb) 3177 3178 3179Strain fitness (log2 ratio) -3 -2 -1 0 1at 3178.063 kb on - strand, within ABID97_RS15360at 3178.202 kb on + strand, within ABID97_RS15360at 3178.202 kb on + strand, within ABID97_RS15360at 3178.202 kb on + strand, within ABID97_RS15360at 3178.203 kb on - strand, within ABID97_RS15360at 3178.203 kb on - strand, within ABID97_RS15360at 3178.203 kb on - strand, within ABID97_RS15360at 3178.259 kb on + strand, within ABID97_RS15360at 3178.454 kb on - strandat 3178.525 kb on + strandat 3178.526 kb on - strandat 3178.799 kb on - strand, within ABID97_RS15365at 3178.799 kb on - strand, within ABID97_RS15365at 3178.799 kb on - strand, within ABID97_RS15365at 3178.801 kb on + strand, within ABID97_RS15365at 3178.801 kb on + strand, within ABID97_RS15365at 3178.801 kb on + strand, within ABID97_RS15365at 3178.802 kb on - strand, within ABID97_RS15365at 3178.837 kb on + strand, within ABID97_RS15365

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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3,178,063 - ABID97_RS15360 0.66 -2.1
3,178,202 + ABID97_RS15360 0.76 -2.5
3,178,202 + ABID97_RS15360 0.76 -2.3
3,178,202 + ABID97_RS15360 0.76 -2.5
3,178,203 - ABID97_RS15360 0.76 -0.5
3,178,203 - ABID97_RS15360 0.76 -1.8
3,178,203 - ABID97_RS15360 0.76 -2.0
3,178,259 + ABID97_RS15360 0.81 -0.1
3,178,454 - -0.5
3,178,525 + -0.5
3,178,526 - -1.4
3,178,799 - ABID97_RS15365 0.29 -1.1
3,178,799 - ABID97_RS15365 0.29 -2.6
3,178,799 - ABID97_RS15365 0.29 -0.1
3,178,801 + ABID97_RS15365 0.30 -1.0
3,178,801 + ABID97_RS15365 0.30 -1.6
3,178,801 + ABID97_RS15365 0.30 -2.6
3,178,802 - ABID97_RS15365 0.30 -3.3
3,178,837 + ABID97_RS15365 0.33 -0.2

Or see this region's nucleotide sequence