Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15350 and ABID97_RS15355 overlap by 43 nucleotides ABID97_RS15355 and ABID97_RS15360 are separated by 43 nucleotides ABID97_RS15360 and ABID97_RS15365 overlap by 1 nucleotides ABID97_RS15365 and ABID97_RS15370 are separated by 43 nucleotides
ABID97_RS15350: ABID97_RS15350 - NAD(P)/FAD-dependent oxidoreductase, at 3,175,771 to 3,176,847
_RS15350
ABID97_RS15355: ABID97_RS15355 - ferredoxin FdxA, at 3,176,805 to 3,177,134
_RS15355
ABID97_RS15360: ABID97_RS15360 - GTP-binding protein, at 3,177,178 to 3,178,518
_RS15360
ABID97_RS15365: ABID97_RS15365 - sulfate adenylyltransferase subunit CysD, at 3,178,518 to 3,179,471
_RS15365
ABID97_RS15370: ABID97_RS15370 - phosphoadenosine phosphosulfate reductase family protein, at 3,179,515 to 3,180,147
_RS15370
Position (kb)
3177
3178
3179 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3178.063 kb on - strand, within ABID97_RS15360 at 3178.202 kb on + strand, within ABID97_RS15360 at 3178.202 kb on + strand, within ABID97_RS15360 at 3178.202 kb on + strand, within ABID97_RS15360 at 3178.203 kb on - strand, within ABID97_RS15360 at 3178.203 kb on - strand, within ABID97_RS15360 at 3178.203 kb on - strand, within ABID97_RS15360 at 3178.259 kb on + strand, within ABID97_RS15360 at 3178.454 kb on - strand at 3178.525 kb on + strand at 3178.526 kb on - strand at 3178.799 kb on - strand, within ABID97_RS15365 at 3178.799 kb on - strand, within ABID97_RS15365 at 3178.799 kb on - strand, within ABID97_RS15365 at 3178.801 kb on + strand, within ABID97_RS15365 at 3178.801 kb on + strand, within ABID97_RS15365 at 3178.801 kb on + strand, within ABID97_RS15365 at 3178.802 kb on - strand, within ABID97_RS15365 at 3178.837 kb on + strand, within ABID97_RS15365
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 3,178,063 - ABID97_RS15360 0.66 -2.1 3,178,202 + ABID97_RS15360 0.76 -2.5 3,178,202 + ABID97_RS15360 0.76 -2.3 3,178,202 + ABID97_RS15360 0.76 -2.5 3,178,203 - ABID97_RS15360 0.76 -0.5 3,178,203 - ABID97_RS15360 0.76 -1.8 3,178,203 - ABID97_RS15360 0.76 -2.0 3,178,259 + ABID97_RS15360 0.81 -0.1 3,178,454 - -0.5 3,178,525 + -0.5 3,178,526 - -1.4 3,178,799 - ABID97_RS15365 0.29 -1.1 3,178,799 - ABID97_RS15365 0.29 -2.6 3,178,799 - ABID97_RS15365 0.29 -0.1 3,178,801 + ABID97_RS15365 0.30 -1.0 3,178,801 + ABID97_RS15365 0.30 -1.6 3,178,801 + ABID97_RS15365 0.30 -2.6 3,178,802 - ABID97_RS15365 0.30 -3.3 3,178,837 + ABID97_RS15365 0.33 -0.2
Or see this region's nucleotide sequence