Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01590

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS01580 and ABID97_RS01585 overlap by 4 nucleotidesABID97_RS01585 and ABID97_RS01590 are separated by 128 nucleotidesABID97_RS01590 and ABID97_RS01595 are separated by 11 nucleotides ABID97_RS01580: ABID97_RS01580 - TIGR01777 family oxidoreductase, at 311,232 to 312,728 _RS01580 ABID97_RS01585: ABID97_RS01585 - DUF4166 domain-containing protein, at 312,725 to 313,396 _RS01585 ABID97_RS01590: ABID97_RS01590 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 313,525 to 314,571 _RS01590 ABID97_RS01595: ABID97_RS01595 - tRNA guanosine(34) transglycosylase Tgt, at 314,583 to 315,755 _RS01595 Position (kb) 313 314 315Strain fitness (log2 ratio) -2 -1 0 1at 312.571 kb on + strand, within ABID97_RS01580at 312.571 kb on + strand, within ABID97_RS01580at 312.572 kb on - strand, within ABID97_RS01580at 312.921 kb on + strand, within ABID97_RS01585at 312.921 kb on + strand, within ABID97_RS01585at 312.922 kb on - strand, within ABID97_RS01585at 312.922 kb on - strand, within ABID97_RS01585at 312.996 kb on + strand, within ABID97_RS01585at 312.996 kb on + strand, within ABID97_RS01585at 312.996 kb on + strand, within ABID97_RS01585at 312.997 kb on - strand, within ABID97_RS01585at 313.071 kb on + strand, within ABID97_RS01585at 313.086 kb on + strand, within ABID97_RS01585at 313.086 kb on + strand, within ABID97_RS01585at 313.086 kb on + strand, within ABID97_RS01585at 313.087 kb on - strand, within ABID97_RS01585at 313.087 kb on - strand, within ABID97_RS01585at 313.113 kb on + strand, within ABID97_RS01585at 313.242 kb on + strand, within ABID97_RS01585at 313.325 kb on + strand, within ABID97_RS01585at 313.325 kb on + strand, within ABID97_RS01585at 313.326 kb on - strand, within ABID97_RS01585at 313.951 kb on + strand, within ABID97_RS01590at 313.993 kb on + strand, within ABID97_RS01590at 313.993 kb on + strand, within ABID97_RS01590at 313.993 kb on + strand, within ABID97_RS01590at 313.994 kb on - strand, within ABID97_RS01590at 314.197 kb on - strand, within ABID97_RS01590at 314.491 kb on + strandat 314.492 kb on - strandat 314.492 kb on - strandat 314.492 kb on - strandat 314.492 kb on - strandat 314.530 kb on + strandat 314.694 kb on + strandat 314.694 kb on + strandat 314.695 kb on - strandat 314.695 kb on - strandat 314.695 kb on - strandat 315.033 kb on + strand, within ABID97_RS01595at 315.034 kb on - strand, within ABID97_RS01595at 315.034 kb on - strand, within ABID97_RS01595at 315.234 kb on + strand, within ABID97_RS01595at 315.235 kb on - strand, within ABID97_RS01595

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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312,571 + ABID97_RS01580 0.89 +0.0
312,571 + ABID97_RS01580 0.89 +1.3
312,572 - ABID97_RS01580 0.90 +0.5
312,921 + ABID97_RS01585 0.29 +0.1
312,921 + ABID97_RS01585 0.29 +0.1
312,922 - ABID97_RS01585 0.29 -1.7
312,922 - ABID97_RS01585 0.29 +0.9
312,996 + ABID97_RS01585 0.40 -0.0
312,996 + ABID97_RS01585 0.40 +0.2
312,996 + ABID97_RS01585 0.40 +0.1
312,997 - ABID97_RS01585 0.40 +0.6
313,071 + ABID97_RS01585 0.51 +0.6
313,086 + ABID97_RS01585 0.54 -0.0
313,086 + ABID97_RS01585 0.54 +0.1
313,086 + ABID97_RS01585 0.54 +1.1
313,087 - ABID97_RS01585 0.54 +1.6
313,087 - ABID97_RS01585 0.54 +0.4
313,113 + ABID97_RS01585 0.58 +0.4
313,242 + ABID97_RS01585 0.77 +0.4
313,325 + ABID97_RS01585 0.89 +0.2
313,325 + ABID97_RS01585 0.89 +0.2
313,326 - ABID97_RS01585 0.89 +1.0
313,951 + ABID97_RS01590 0.41 -0.7
313,993 + ABID97_RS01590 0.45 +0.2
313,993 + ABID97_RS01590 0.45 -0.8
313,993 + ABID97_RS01590 0.45 -0.2
313,994 - ABID97_RS01590 0.45 -0.8
314,197 - ABID97_RS01590 0.64 -0.4
314,491 + -0.6
314,492 - -1.5
314,492 - -0.2
314,492 - +0.8
314,492 - -0.6
314,530 + -1.1
314,694 + -1.0
314,694 + -0.9
314,695 - -0.2
314,695 - -1.0
314,695 - -1.1
315,033 + ABID97_RS01595 0.38 -0.8
315,034 - ABID97_RS01595 0.38 -2.1
315,034 - ABID97_RS01595 0.38 -0.4
315,234 + ABID97_RS01595 0.55 -0.3
315,235 - ABID97_RS01595 0.56 -0.8

Or see this region's nucleotide sequence