Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1889

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1888 and EX28DRAFT_1889 are separated by 764 nucleotidesEX28DRAFT_1889 and EX28DRAFT_1890 are separated by 4 nucleotidesEX28DRAFT_1890 and EX28DRAFT_1891 are separated by 23 nucleotidesEX28DRAFT_1891 and EX28DRAFT_1892 are separated by 26 nucleotides EX28DRAFT_1888: EX28DRAFT_1888 - Curlin associated repeat, at 1,899,584 to 1,900,039 _1888 EX28DRAFT_1889: EX28DRAFT_1889 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 1,900,804 to 1,901,454 _1889 EX28DRAFT_1890: EX28DRAFT_1890 - Curli assembly protein CsgE, at 1,901,459 to 1,901,848 _1890 EX28DRAFT_1891: EX28DRAFT_1891 - Type VIII secretion system (T8SS), CsgF protein, at 1,901,872 to 1,902,285 _1891 EX28DRAFT_1892: EX28DRAFT_1892 - Uncharacterized protein involved in formation of curli polymers, at 1,902,312 to 1,903,145 _1892 Position (kb) 1900 1901 1902Strain fitness (log2 ratio) -3 -2 -1 0 1at 1899.809 kb on - strand, within EX28DRAFT_1888at 1900.065 kb on - strandat 1900.286 kb on + strandat 1900.757 kb on - strandat 1900.807 kb on + strandat 1900.808 kb on - strandat 1900.996 kb on - strand, within EX28DRAFT_1889at 1901.128 kb on + strand, within EX28DRAFT_1889at 1901.173 kb on - strand, within EX28DRAFT_1889at 1901.177 kb on + strand, within EX28DRAFT_1889at 1901.216 kb on - strand, within EX28DRAFT_1889at 1901.216 kb on - strand, within EX28DRAFT_1889at 1901.247 kb on + strand, within EX28DRAFT_1889at 1901.378 kb on - strand, within EX28DRAFT_1889at 1901.618 kb on - strand, within EX28DRAFT_1890at 1901.618 kb on - strand, within EX28DRAFT_1890at 1901.618 kb on - strand, within EX28DRAFT_1890at 1901.621 kb on + strand, within EX28DRAFT_1890at 1901.622 kb on - strand, within EX28DRAFT_1890at 1901.622 kb on - strand, within EX28DRAFT_1890at 1901.623 kb on + strand, within EX28DRAFT_1890at 1901.633 kb on - strand, within EX28DRAFT_1890at 1901.633 kb on - strand, within EX28DRAFT_1890at 1901.634 kb on + strand, within EX28DRAFT_1890at 1901.635 kb on - strand, within EX28DRAFT_1890at 1901.702 kb on - strand, within EX28DRAFT_1890at 1901.702 kb on - strand, within EX28DRAFT_1890at 1901.702 kb on - strand, within EX28DRAFT_1890at 1901.702 kb on - strand, within EX28DRAFT_1890at 1901.706 kb on - strand, within EX28DRAFT_1890at 1901.733 kb on + strand, within EX28DRAFT_1890at 1901.799 kb on + strand, within EX28DRAFT_1890at 1901.814 kb on + strandat 1901.815 kb on - strandat 1901.815 kb on - strandat 1901.847 kb on - strandat 1901.885 kb on - strandat 1901.885 kb on - strandat 1901.885 kb on - strandat 1901.980 kb on - strand, within EX28DRAFT_1891at 1902.039 kb on - strand, within EX28DRAFT_1891at 1902.130 kb on - strand, within EX28DRAFT_1891at 1902.290 kb on + strandat 1902.294 kb on + strandat 1902.294 kb on + strandat 1902.294 kb on + strandat 1902.295 kb on - strandat 1902.295 kb on - strandat 1902.329 kb on - strandat 1902.329 kb on - strandat 1902.347 kb on - strandat 1902.361 kb on + strandat 1902.374 kb on + strandat 1902.374 kb on + strandat 1902.374 kb on + strandat 1902.392 kb on + strandat 1902.398 kb on - strand, within EX28DRAFT_1892

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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1,899,809 - EX28DRAFT_1888 0.49 -0.1
1,900,065 - -0.2
1,900,286 + -0.4
1,900,757 - -0.4
1,900,807 + +0.7
1,900,808 - -0.9
1,900,996 - EX28DRAFT_1889 0.29 -0.3
1,901,128 + EX28DRAFT_1889 0.50 +0.1
1,901,173 - EX28DRAFT_1889 0.57 -0.3
1,901,177 + EX28DRAFT_1889 0.57 -3.2
1,901,216 - EX28DRAFT_1889 0.63 -0.4
1,901,216 - EX28DRAFT_1889 0.63 -0.3
1,901,247 + EX28DRAFT_1889 0.68 -0.9
1,901,378 - EX28DRAFT_1889 0.88 -1.1
1,901,618 - EX28DRAFT_1890 0.41 +0.5
1,901,618 - EX28DRAFT_1890 0.41 +0.4
1,901,618 - EX28DRAFT_1890 0.41 -0.4
1,901,621 + EX28DRAFT_1890 0.42 -1.8
1,901,622 - EX28DRAFT_1890 0.42 -1.0
1,901,622 - EX28DRAFT_1890 0.42 -0.1
1,901,623 + EX28DRAFT_1890 0.42 -0.4
1,901,633 - EX28DRAFT_1890 0.45 +0.5
1,901,633 - EX28DRAFT_1890 0.45 -0.1
1,901,634 + EX28DRAFT_1890 0.45 -0.5
1,901,635 - EX28DRAFT_1890 0.45 -0.8
1,901,702 - EX28DRAFT_1890 0.62 +0.9
1,901,702 - EX28DRAFT_1890 0.62 +0.5
1,901,702 - EX28DRAFT_1890 0.62 -0.3
1,901,702 - EX28DRAFT_1890 0.62 -1.0
1,901,706 - EX28DRAFT_1890 0.63 -0.6
1,901,733 + EX28DRAFT_1890 0.70 -0.3
1,901,799 + EX28DRAFT_1890 0.87 +0.6
1,901,814 + -0.5
1,901,815 - -0.1
1,901,815 - +1.3
1,901,847 - +0.0
1,901,885 - -0.6
1,901,885 - +0.2
1,901,885 - -0.7
1,901,980 - EX28DRAFT_1891 0.26 -0.7
1,902,039 - EX28DRAFT_1891 0.40 -0.0
1,902,130 - EX28DRAFT_1891 0.62 -0.6
1,902,290 + +0.2
1,902,294 + -0.5
1,902,294 + +0.2
1,902,294 + -0.3
1,902,295 - -0.2
1,902,295 - +0.5
1,902,329 - +0.1
1,902,329 - +0.0
1,902,347 - +0.7
1,902,361 + +0.2
1,902,374 + +1.3
1,902,374 + +0.0
1,902,374 + +0.1
1,902,392 + +0.0
1,902,398 - EX28DRAFT_1892 0.10 -0.5

Or see this region's nucleotide sequence