Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07405

Experiment: carbonsource_all

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbonsource_all
1,596,873	+		AMB_RS07400	0.50	+0.9
1,596,873	+		AMB_RS07400	0.50	+0.4
1,596,873	+		AMB_RS07400	0.50	+1.0
1,596,873	+		AMB_RS07400	0.50	+2.5
1,596,874	-		AMB_RS07400	0.50	+0.6
1,596,874	-		AMB_RS07400	0.50	+3.0
1,596,874	-		AMB_RS07400	0.50	-0.3
1,596,875	+		AMB_RS07400	0.50	-0.0
1,596,875	+		AMB_RS07400	0.50	+0.3
1,596,876	-		AMB_RS07400	0.51	+1.0
1,596,937	+		AMB_RS07400	0.54	+1.0
1,597,098	-		AMB_RS07400	0.63	-0.8
1,597,275	+		AMB_RS07400	0.73	+2.0
1,597,275	+		AMB_RS07400	0.73	+2.0
1,597,275	+		AMB_RS07400	0.73	-1.0
1,597,275	+		AMB_RS07400	0.73	+1.1
1,597,276	-		AMB_RS07400	0.73	+1.2
1,597,276	-		AMB_RS07400	0.73	+0.5
1,597,324	+		AMB_RS07400	0.76	+0.2
1,597,324	+		AMB_RS07400	0.76	+0.0
1,597,324	+		AMB_RS07400	0.76	+0.4
1,597,325	-		AMB_RS07400	0.76	+0.2
1,597,325	-		AMB_RS07400	0.76	+1.0
1,597,325	-		AMB_RS07400	0.76	-1.0
1,597,325	-		AMB_RS07400	0.76	-0.4
1,597,325	-		AMB_RS07400	0.76	+0.1
1,597,752	+				+2.9
1,597,753	-				+0.0
1,597,753	-				+0.4
1,597,753	-				+0.0
1,597,753	-				-1.0
1,597,764	-				+0.0
1,597,769	+				-1.0
1,597,786	+				+1.1
1,597,786	+				+0.0
1,597,787	-				+0.1
1,597,787	-				+0.5
1,597,790	+				+3.7
1,597,790	+				-1.4
1,597,790	+				+1.7
1,597,791	-				+0.9
1,597,791	-				-0.0
1,597,791	-				-2.0
1,597,794	+				+1.4
1,597,794	+				+2.6
1,597,794	+				+0.7
1,597,795	-				-3.2
1,597,795	-				-1.6
1,597,808	+				+1.2
1,597,808	+				+1.6
1,597,809	-				+2.4
1,597,834	+				-0.3
1,597,891	+				-1.1
1,597,891	+				+0.3
1,597,891	+				+1.1
1,597,892	-				+0.0
1,597,892	-				+1.6
1,597,892	-				-2.1
1,597,892	-				-2.8
1,597,892	-				+3.7
1,598,441	+				-2.6
1,598,441	+				-1.0
1,598,441	+				+0.3
1,598,442	-				+3.0
1,598,442	-				+4.2
1,598,442	-				+1.6
1,598,442	-				+1.4
1,598,442	-				+0.0
1,598,443	+				+0.0
1,598,444	-				+1.8
1,598,501	+		AMB_RS07405	0.10	+0.2
1,598,822	+		AMB_RS07405	0.15	+1.8
1,598,822	+		AMB_RS07405	0.15	+0.0
1,598,822	+		AMB_RS07405	0.15	-2.0
1,598,822	+		AMB_RS07405	0.15	+1.2
1,598,823	-		AMB_RS07405	0.15	+2.2
1,598,823	-		AMB_RS07405	0.15	+0.8
1,599,006	-		AMB_RS07405	0.18	+1.1
1,599,006	-		AMB_RS07405	0.18	+0.6
1,599,006	-		AMB_RS07405	0.18	-0.4
1,599,023	+		AMB_RS07405	0.18	+0.0
1,599,023	+		AMB_RS07405	0.18	-2.3
1,599,344	+		AMB_RS07405	0.23	+0.6
1,599,345	-		AMB_RS07405	0.23	+0.8
1,599,505	-		AMB_RS07405	0.26	+0.0
1,599,505	-		AMB_RS07405	0.26	-0.2
1,599,505	-		AMB_RS07405	0.26	+1.7
1,599,882	-		AMB_RS07405	0.32	+0.3
1,599,882	-		AMB_RS07405	0.32	+2.1
1,599,882	-		AMB_RS07405	0.32	+0.8
1,599,901	+		AMB_RS07405	0.32	-0.3
1,599,901	+		AMB_RS07405	0.32	+0.1
1,599,901	+		AMB_RS07405	0.32	+0.3
1,599,902	-		AMB_RS07405	0.32	+0.5
1,599,902	-		AMB_RS07405	0.32	+0.0
1,599,941	+		AMB_RS07405	0.33	+0.5
1,600,157	+		AMB_RS07405	0.36	+0.6
1,600,158	-		AMB_RS07405	0.36	-2.0
1,600,158	-		AMB_RS07405	0.36	-0.3
1,600,158	-		AMB_RS07405	0.36	+2.3
1,600,158	-		AMB_RS07405	0.36	-1.0
1,600,226	+		AMB_RS07405	0.37	+2.6
1,600,227	-		AMB_RS07405	0.37	+0.8
1,600,227	-		AMB_RS07405	0.37	+1.0
1,600,227	-		AMB_RS07405	0.37	+1.8
1,600,247	+		AMB_RS07405	0.37	+0.7
1,600,247	+		AMB_RS07405	0.37	-3.2
1,600,248	-		AMB_RS07405	0.37	+0.1
1,600,378	+		AMB_RS07405	0.39	+1.2
1,600,378	+		AMB_RS07405	0.39	+0.5
1,600,379	-		AMB_RS07405	0.39	+1.2
1,600,379	-		AMB_RS07405	0.39	+0.9
1,600,398	-		AMB_RS07405	0.40	+1.0
1,600,640	+		AMB_RS07405	0.44	+0.7
1,600,669	+		AMB_RS07405	0.44	+1.1
1,600,669	+		AMB_RS07405	0.44	-0.2
1,600,669	+		AMB_RS07405	0.44	+0.6
1,600,669	+		AMB_RS07405	0.44	+0.5
1,600,669	+		AMB_RS07405	0.44	-3.2
1,600,670	-		AMB_RS07405	0.44	+0.8
1,600,712	+		AMB_RS07405	0.45	+1.2
1,600,712	+		AMB_RS07405	0.45	+1.5
1,600,712	+		AMB_RS07405	0.45	+0.2
1,600,712	+		AMB_RS07405	0.45	+1.8
1,600,712	+		AMB_RS07405	0.45	+1.2
1,600,712	+		AMB_RS07405	0.45	+2.3
1,600,712	+		AMB_RS07405	0.45	+0.0
1,600,713	-		AMB_RS07405	0.45	+2.5
1,600,713	-		AMB_RS07405	0.45	+0.8
1,600,713	-		AMB_RS07405	0.45	+0.8
1,600,713	-		AMB_RS07405	0.45	+0.9
1,600,713	-		AMB_RS07405	0.45	+0.8
1,600,721	+		AMB_RS07405	0.45	+0.8
1,600,772	+		AMB_RS07405	0.46	-1.0
1,600,773	-		AMB_RS07405	0.46	+0.0
1,600,773	-		AMB_RS07405	0.46	-0.1
1,600,773	-		AMB_RS07405	0.46	+0.0
1,600,943	+		AMB_RS07405	0.48	+0.7
1,600,943	+		AMB_RS07405	0.48	+1.6
1,600,943	+		AMB_RS07405	0.48	+1.4
1,600,943	+		AMB_RS07405	0.48	+1.0
1,600,944	-		AMB_RS07405	0.48	+1.4
1,600,944	-		AMB_RS07405	0.48	+0.1
1,600,952	+		AMB_RS07405	0.48	-0.7
1,601,030	+		AMB_RS07405	0.50	+1.4
1,601,030	+		AMB_RS07405	0.50	+3.0
1,601,030	+		AMB_RS07405	0.50	+1.6
1,601,030	+		AMB_RS07405	0.50	+1.6
1,601,030	+		AMB_RS07405	0.50	+1.2
1,601,031	-		AMB_RS07405	0.50	+0.6
1,601,031	-		AMB_RS07405	0.50	+1.5
1,601,059	+		AMB_RS07405	0.50	-1.0
1,601,060	-		AMB_RS07405	0.50	-2.0
1,601,135	+		AMB_RS07405	0.51	-0.5
1,601,201	+		AMB_RS07405	0.52	-2.0
1,601,201	+		AMB_RS07405	0.52	-2.0
1,601,202	-		AMB_RS07405	0.52	+0.8
1,601,246	+		AMB_RS07405	0.53	+1.0
1,601,247	-		AMB_RS07405	0.53	+0.7
1,601,324	+		AMB_RS07405	0.54	+1.4
1,601,324	+		AMB_RS07405	0.54	+1.2
1,601,324	+		AMB_RS07405	0.54	+0.0
1,601,325	-		AMB_RS07405	0.54	-1.6
1,601,325	-		AMB_RS07405	0.54	+1.4
1,601,325	-		AMB_RS07405	0.54	+0.4
1,601,325	-		AMB_RS07405	0.54	-1.7
1,601,325	-		AMB_RS07405	0.54	+0.8
1,601,325	-		AMB_RS07405	0.54	+2.2
1,601,444	+		AMB_RS07405	0.56	-0.6
1,601,444	+		AMB_RS07405	0.56	+2.8
1,601,445	-		AMB_RS07405	0.56	-3.3
1,601,580	-		AMB_RS07405	0.58	-2.6
1,601,580	-		AMB_RS07405	0.58	+1.3
1,601,601	-		AMB_RS07405	0.58	+0.2
1,601,636	+		AMB_RS07405	0.59	+0.0
1,601,636	+		AMB_RS07405	0.59	+0.8
1,601,636	+		AMB_RS07405	0.59	-2.1
1,601,637	-		AMB_RS07405	0.59	+0.3
1,601,637	-		AMB_RS07405	0.59	+3.2
1,601,637	-		AMB_RS07405	0.59	+1.2
1,601,660	+		AMB_RS07405	0.59	+0.1
1,601,661	-		AMB_RS07405	0.59	+1.1
1,601,661	-		AMB_RS07405	0.59	-2.0
1,601,688	+		AMB_RS07405	0.60	-1.4
1,601,689	-		AMB_RS07405	0.60	-0.6
1,601,689	-		AMB_RS07405	0.60	+0.0
1,601,689	-		AMB_RS07405	0.60	+0.9
1,601,731	+		AMB_RS07405	0.61	+0.4
1,601,732	-		AMB_RS07405	0.61	+0.9
1,602,023	+		AMB_RS07405	0.65	+0.9
1,602,023	+		AMB_RS07405	0.65	-0.4
1,602,023	+		AMB_RS07405	0.65	+2.8
1,602,024	-		AMB_RS07405	0.65	+1.1
1,602,024	-		AMB_RS07405	0.65	-0.8
1,602,096	-		AMB_RS07405	0.66	+0.5
1,602,109	+		AMB_RS07405	0.66	+0.9
1,602,109	+		AMB_RS07405	0.66	+0.5
1,602,170	+		AMB_RS07405	0.67	+0.5
1,602,171	-		AMB_RS07405	0.67	-0.1
1,602,276	-		AMB_RS07405	0.69	+0.6
1,602,276	-		AMB_RS07405	0.69	+0.2
1,602,492	-		AMB_RS07405	0.72	+1.0
1,602,573	-		AMB_RS07405	0.74	+1.0
1,602,573	-		AMB_RS07405	0.74	+1.6
1,602,573	-		AMB_RS07405	0.74	+0.4
1,602,573	-		AMB_RS07405	0.74	-2.8
1,602,573	-		AMB_RS07405	0.74	+1.5
1,602,599	+		AMB_RS07405	0.74	+0.6
1,602,599	+		AMB_RS07405	0.74	+1.2
1,602,599	+		AMB_RS07405	0.74	+0.8
1,602,600	-		AMB_RS07405	0.74	+0.0
1,602,600	-		AMB_RS07405	0.74	+1.5
1,602,600	-		AMB_RS07405	0.74	+0.7
1,602,600	-		AMB_RS07405	0.74	+2.7
1,602,600	-		AMB_RS07405	0.74	+0.8
1,602,602	-		AMB_RS07405	0.74	+1.4
1,602,718	+		AMB_RS07405	0.76	+1.8
1,602,882	-		AMB_RS07405	0.78	+0.7
1,602,882	-		AMB_RS07405	0.78	+1.3
1,603,034	+		AMB_RS07405	0.81	+0.8
1,603,034	+		AMB_RS07405	0.81	+2.0
1,603,034	+		AMB_RS07405	0.81	+1.3
1,603,034	+		AMB_RS07405	0.81	+2.0
1,603,034	+		AMB_RS07405	0.81	+0.5
1,603,034	+		AMB_RS07405	0.81	+1.2
1,603,035	-		AMB_RS07405	0.81	+0.4
1,603,035	-		AMB_RS07405	0.81	+0.2
1,603,035	-		AMB_RS07405	0.81	+0.8
1,603,092	-		AMB_RS07405	0.82	+1.3
1,603,325	+		AMB_RS07405	0.85	+3.3
1,603,326	-		AMB_RS07405	0.85	+0.3
1,603,326	-		AMB_RS07405	0.85	+0.3
1,603,366	+		AMB_RS07405	0.86	+2.3
1,603,366	+		AMB_RS07405	0.86	+0.0
1,603,366	+		AMB_RS07405	0.86	+0.9
1,603,367	-		AMB_RS07405	0.86	+0.8
1,603,376	+		AMB_RS07405	0.86	+1.1
1,603,377	-		AMB_RS07405	0.86	+0.1
1,603,726	+				+0.7
1,603,726	+				+2.0
1,603,795	+				+1.0
1,603,795	+				-0.2
1,603,795	+				-0.7
1,603,796	-				+1.5
1,603,796	-				+0.8
1,603,796	-				-1.6
1,603,797	+				-2.2
1,603,797	+				+3.3
1,603,797	+				+1.8
1,603,797	+				-2.2
1,603,797	+				-0.8
1,603,797	+				+1.4
1,603,797	+				-1.4
1,603,798	-				+1.7
1,603,798	-				+0.0
1,603,798	-				-0.1
1,603,798	-				+1.4
1,603,798	-				+1.1
1,603,798	-				+0.9
1,603,969	+				+0.7
1,604,654	+		AMB_RS07410	0.17	+1.6
1,604,654	+		AMB_RS07410	0.17	+0.6
1,604,655	-		AMB_RS07410	0.17	-0.2
1,604,700	+		AMB_RS07410	0.20	+1.5
1,604,700	+		AMB_RS07410	0.20	+0.8
1,604,700	+		AMB_RS07410	0.20	+0.8
1,604,700	+		AMB_RS07410	0.20	+0.0
1,604,701	-		AMB_RS07410	0.20	-1.0
1,604,701	-		AMB_RS07410	0.20	+0.0
1,604,796	+		AMB_RS07410	0.25	+0.9
1,604,796	+		AMB_RS07410	0.25	+1.2
1,604,796	+		AMB_RS07410	0.25	+1.1
1,604,797	-		AMB_RS07410	0.25	+1.2
1,604,911	-		AMB_RS07410	0.31	+1.2
1,604,911	-		AMB_RS07410	0.31	+0.0
1,604,911	-		AMB_RS07410	0.31	+0.4
1,604,922	+		AMB_RS07410	0.31	+0.6
1,604,922	+		AMB_RS07410	0.31	-1.4
1,605,019	+		AMB_RS07410	0.36	+2.5
1,605,019	+		AMB_RS07410	0.36	+1.1
1,605,019	+		AMB_RS07410	0.36	-1.3
1,605,019	+		AMB_RS07410	0.36	+1.3
1,605,019	+		AMB_RS07410	0.36	+0.1
1,605,020	-		AMB_RS07410	0.36	+0.9
1,605,020	-		AMB_RS07410	0.36	-1.0
1,605,020	-		AMB_RS07410	0.36	-0.6
1,605,020	-		AMB_RS07410	0.36	-0.4
1,605,020	-		AMB_RS07410	0.36	+0.9
1,605,020	-		AMB_RS07410	0.36	-1.0
1,605,020	-		AMB_RS07410	0.36	+1.2
1,605,020	-		AMB_RS07410	0.36	+0.8
1,605,060	+		AMB_RS07410	0.38	+0.8
1,605,061	-		AMB_RS07410	0.39	+0.0
1,605,061	-		AMB_RS07410	0.39	+1.3
1,605,061	-		AMB_RS07410	0.39	+1.3
1,605,225	+		AMB_RS07410	0.47	+1.0