Experiment: Polygalacturonic 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15515 and HMPREF1058_RS15510 are separated by 82 nucleotides HMPREF1058_RS15510 and HMPREF1058_RS15505 are separated by 90 nucleotides HMPREF1058_RS15505 and HMPREF1058_RS15500 are separated by 51 nucleotides
HMPREF1058_RS15515: HMPREF1058_RS15515 - alpha-1,3-galactosidase, at 897,031 to 898,848
_RS15515
HMPREF1058_RS15510: HMPREF1058_RS15510 - xanthan lyase, at 898,931 to 901,801
_RS15510
HMPREF1058_RS15505: HMPREF1058_RS15505 - hypothetical protein, at 901,892 to 902,209
_RS15505
HMPREF1058_RS15500: HMPREF1058_RS15500 - YgiQ family radical SAM protein, at 902,261 to 904,150
_RS15500
Position (kb) 898
899
900
901
902 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 897.960 kb on - strand, within HMPREF1058_RS15515 at 898.022 kb on - strand, within HMPREF1058_RS15515 at 898.022 kb on - strand, within HMPREF1058_RS15515 at 898.042 kb on - strand, within HMPREF1058_RS15515 at 898.102 kb on + strand, within HMPREF1058_RS15515 at 898.103 kb on - strand, within HMPREF1058_RS15515 at 898.187 kb on + strand, within HMPREF1058_RS15515 at 898.187 kb on + strand, within HMPREF1058_RS15515 at 898.188 kb on - strand, within HMPREF1058_RS15515 at 898.221 kb on + strand, within HMPREF1058_RS15515 at 898.222 kb on - strand, within HMPREF1058_RS15515 at 898.419 kb on + strand, within HMPREF1058_RS15515 at 898.420 kb on - strand, within HMPREF1058_RS15515 at 898.438 kb on + strand, within HMPREF1058_RS15515 at 898.438 kb on + strand, within HMPREF1058_RS15515 at 898.459 kb on - strand, within HMPREF1058_RS15515 at 898.459 kb on - strand, within HMPREF1058_RS15515 at 898.568 kb on - strand, within HMPREF1058_RS15515 at 898.605 kb on - strand, within HMPREF1058_RS15515 at 898.605 kb on - strand, within HMPREF1058_RS15515 at 898.607 kb on + strand, within HMPREF1058_RS15515 at 898.786 kb on - strand at 898.786 kb on - strand at 898.911 kb on + strand at 898.974 kb on + strand at 899.006 kb on - strand at 899.054 kb on + strand at 899.054 kb on + strand at 899.064 kb on + strand at 899.079 kb on + strand at 899.176 kb on + strand at 899.176 kb on + strand at 899.176 kb on + strand at 899.177 kb on - strand at 899.203 kb on - strand at 899.229 kb on + strand, within HMPREF1058_RS15510 at 899.324 kb on + strand, within HMPREF1058_RS15510 at 899.428 kb on + strand, within HMPREF1058_RS15510 at 899.518 kb on + strand, within HMPREF1058_RS15510 at 899.518 kb on + strand, within HMPREF1058_RS15510 at 899.518 kb on + strand, within HMPREF1058_RS15510 at 899.518 kb on + strand, within HMPREF1058_RS15510 at 899.524 kb on - strand, within HMPREF1058_RS15510 at 899.555 kb on + strand, within HMPREF1058_RS15510 at 899.828 kb on + strand, within HMPREF1058_RS15510 at 899.837 kb on + strand, within HMPREF1058_RS15510 at 899.838 kb on - strand, within HMPREF1058_RS15510 at 899.888 kb on - strand, within HMPREF1058_RS15510 at 899.997 kb on + strand, within HMPREF1058_RS15510 at 900.000 kb on + strand, within HMPREF1058_RS15510 at 900.000 kb on + strand, within HMPREF1058_RS15510 at 900.178 kb on + strand, within HMPREF1058_RS15510 at 900.178 kb on + strand, within HMPREF1058_RS15510 at 900.188 kb on + strand, within HMPREF1058_RS15510 at 900.190 kb on + strand, within HMPREF1058_RS15510 at 900.199 kb on + strand, within HMPREF1058_RS15510 at 900.202 kb on - strand, within HMPREF1058_RS15510 at 900.337 kb on - strand, within HMPREF1058_RS15510 at 900.356 kb on + strand, within HMPREF1058_RS15510 at 900.356 kb on + strand, within HMPREF1058_RS15510 at 900.357 kb on - strand, within HMPREF1058_RS15510 at 900.368 kb on + strand, within HMPREF1058_RS15510 at 900.370 kb on + strand, within HMPREF1058_RS15510 at 900.374 kb on - strand, within HMPREF1058_RS15510 at 900.433 kb on - strand, within HMPREF1058_RS15510 at 900.455 kb on - strand, within HMPREF1058_RS15510 at 900.645 kb on + strand, within HMPREF1058_RS15510 at 900.659 kb on - strand, within HMPREF1058_RS15510 at 900.678 kb on - strand, within HMPREF1058_RS15510 at 900.699 kb on + strand, within HMPREF1058_RS15510 at 900.801 kb on - strand, within HMPREF1058_RS15510 at 900.805 kb on - strand, within HMPREF1058_RS15510 at 900.809 kb on + strand, within HMPREF1058_RS15510 at 900.810 kb on - strand, within HMPREF1058_RS15510 at 900.810 kb on - strand, within HMPREF1058_RS15510 at 900.866 kb on + strand, within HMPREF1058_RS15510 at 900.868 kb on + strand, within HMPREF1058_RS15510 at 900.869 kb on - strand, within HMPREF1058_RS15510 at 900.897 kb on - strand, within HMPREF1058_RS15510 at 900.898 kb on + strand, within HMPREF1058_RS15510 at 900.898 kb on + strand, within HMPREF1058_RS15510 at 900.909 kb on + strand, within HMPREF1058_RS15510 at 900.910 kb on - strand, within HMPREF1058_RS15510 at 900.980 kb on - strand, within HMPREF1058_RS15510 at 901.035 kb on + strand, within HMPREF1058_RS15510 at 901.083 kb on + strand, within HMPREF1058_RS15510 at 901.089 kb on - strand, within HMPREF1058_RS15510 at 901.091 kb on - strand, within HMPREF1058_RS15510 at 901.439 kb on + strand, within HMPREF1058_RS15510 at 901.440 kb on - strand, within HMPREF1058_RS15510 at 901.443 kb on + strand, within HMPREF1058_RS15510 at 901.444 kb on - strand, within HMPREF1058_RS15510 at 901.491 kb on + strand, within HMPREF1058_RS15510 at 901.494 kb on + strand, within HMPREF1058_RS15510 at 901.495 kb on - strand, within HMPREF1058_RS15510 at 901.495 kb on - strand, within HMPREF1058_RS15510 at 901.542 kb on + strand at 901.542 kb on + strand at 901.543 kb on - strand at 901.543 kb on - strand at 901.596 kb on - strand at 901.596 kb on - strand at 901.655 kb on + strand at 901.656 kb on - strand at 901.657 kb on + strand at 901.670 kb on + strand at 901.700 kb on + strand at 901.830 kb on + strand at 901.830 kb on + strand at 901.838 kb on + strand at 901.838 kb on + strand at 901.838 kb on + strand at 901.878 kb on - strand at 901.892 kb on - strand at 901.895 kb on + strand at 901.895 kb on + strand at 901.895 kb on + strand at 901.900 kb on + strand at 901.901 kb on - strand at 901.902 kb on + strand at 901.902 kb on + strand at 901.902 kb on + strand at 901.961 kb on - strand, within HMPREF1058_RS15505 at 901.970 kb on + strand, within HMPREF1058_RS15505 at 901.970 kb on + strand, within HMPREF1058_RS15505 at 901.977 kb on + strand, within HMPREF1058_RS15505 at 902.080 kb on + strand, within HMPREF1058_RS15505 at 902.109 kb on + strand, within HMPREF1058_RS15505 at 902.119 kb on + strand, within HMPREF1058_RS15505 at 902.206 kb on - strand at 902.208 kb on - strand at 902.208 kb on - strand at 902.232 kb on + strand at 902.256 kb on + strand at 902.310 kb on + strand at 902.340 kb on + strand at 902.340 kb on + strand at 902.368 kb on - strand at 902.525 kb on - strand, within HMPREF1058_RS15500 at 902.667 kb on + strand, within HMPREF1058_RS15500 at 902.687 kb on - strand, within HMPREF1058_RS15500 at 902.688 kb on + strand, within HMPREF1058_RS15500 at 902.689 kb on - strand, within HMPREF1058_RS15500 at 902.743 kb on + strand, within HMPREF1058_RS15500 at 902.757 kb on + strand, within HMPREF1058_RS15500 at 902.775 kb on + strand, within HMPREF1058_RS15500
Per-strain Table
Position Strand Gene LocusTag Fraction Polygalacturonic 5 mg/ml (C) remove 897,960 - HMPREF1058_RS15515 0.51 -0.0 898,022 - HMPREF1058_RS15515 0.55 -0.7 898,022 - HMPREF1058_RS15515 0.55 -0.2 898,042 - HMPREF1058_RS15515 0.56 +1.5 898,102 + HMPREF1058_RS15515 0.59 -0.5 898,103 - HMPREF1058_RS15515 0.59 -0.9 898,187 + HMPREF1058_RS15515 0.64 -1.2 898,187 + HMPREF1058_RS15515 0.64 +0.2 898,188 - HMPREF1058_RS15515 0.64 -0.9 898,221 + HMPREF1058_RS15515 0.65 +0.3 898,222 - HMPREF1058_RS15515 0.66 -0.8 898,419 + HMPREF1058_RS15515 0.76 +1.7 898,420 - HMPREF1058_RS15515 0.76 -1.8 898,438 + HMPREF1058_RS15515 0.77 +0.8 898,438 + HMPREF1058_RS15515 0.77 -1.6 898,459 - HMPREF1058_RS15515 0.79 -1.3 898,459 - HMPREF1058_RS15515 0.79 -1.1 898,568 - HMPREF1058_RS15515 0.85 -2.2 898,605 - HMPREF1058_RS15515 0.87 +2.0 898,605 - HMPREF1058_RS15515 0.87 +0.2 898,607 + HMPREF1058_RS15515 0.87 -2.5 898,786 - +0.7 898,786 - -0.9 898,911 + +0.5 898,974 + +0.2 899,006 - +2.2 899,054 + +0.5 899,054 + +0.4 899,064 + +0.0 899,079 + +1.2 899,176 + +1.4 899,176 + +1.8 899,176 + +1.4 899,177 - +2.0 899,203 - -2.3 899,229 + HMPREF1058_RS15510 0.10 +1.2 899,324 + HMPREF1058_RS15510 0.14 -0.0 899,428 + HMPREF1058_RS15510 0.17 +1.0 899,518 + HMPREF1058_RS15510 0.20 +2.3 899,518 + HMPREF1058_RS15510 0.20 +1.6 899,518 + HMPREF1058_RS15510 0.20 +0.3 899,518 + HMPREF1058_RS15510 0.20 +1.7 899,524 - HMPREF1058_RS15510 0.21 +0.7 899,555 + HMPREF1058_RS15510 0.22 -0.6 899,828 + HMPREF1058_RS15510 0.31 -0.1 899,837 + HMPREF1058_RS15510 0.32 +0.0 899,838 - HMPREF1058_RS15510 0.32 +2.0 899,888 - HMPREF1058_RS15510 0.33 +2.7 899,997 + HMPREF1058_RS15510 0.37 +1.5 900,000 + HMPREF1058_RS15510 0.37 +3.0 900,000 + HMPREF1058_RS15510 0.37 +1.6 900,178 + HMPREF1058_RS15510 0.43 +1.3 900,178 + HMPREF1058_RS15510 0.43 -0.7 900,188 + HMPREF1058_RS15510 0.44 +0.6 900,190 + HMPREF1058_RS15510 0.44 +1.2 900,199 + HMPREF1058_RS15510 0.44 +1.7 900,202 - HMPREF1058_RS15510 0.44 +1.4 900,337 - HMPREF1058_RS15510 0.49 -0.7 900,356 + HMPREF1058_RS15510 0.50 -2.0 900,356 + HMPREF1058_RS15510 0.50 +0.8 900,357 - HMPREF1058_RS15510 0.50 +1.2 900,368 + HMPREF1058_RS15510 0.50 +2.3 900,370 + HMPREF1058_RS15510 0.50 -1.0 900,374 - HMPREF1058_RS15510 0.50 -0.9 900,433 - HMPREF1058_RS15510 0.52 +1.9 900,455 - HMPREF1058_RS15510 0.53 +1.0 900,645 + HMPREF1058_RS15510 0.60 +2.5 900,659 - HMPREF1058_RS15510 0.60 +0.3 900,678 - HMPREF1058_RS15510 0.61 +1.1 900,699 + HMPREF1058_RS15510 0.62 +0.8 900,801 - HMPREF1058_RS15510 0.65 +0.9 900,805 - HMPREF1058_RS15510 0.65 +1.2 900,809 + HMPREF1058_RS15510 0.65 -1.0 900,810 - HMPREF1058_RS15510 0.65 +1.9 900,810 - HMPREF1058_RS15510 0.65 +1.0 900,866 + HMPREF1058_RS15510 0.67 +2.4 900,868 + HMPREF1058_RS15510 0.67 +1.2 900,869 - HMPREF1058_RS15510 0.68 +1.1 900,897 - HMPREF1058_RS15510 0.68 +0.1 900,898 + HMPREF1058_RS15510 0.69 +1.4 900,898 + HMPREF1058_RS15510 0.69 +0.1 900,909 + HMPREF1058_RS15510 0.69 +2.1 900,910 - HMPREF1058_RS15510 0.69 +1.5 900,980 - HMPREF1058_RS15510 0.71 +0.3 901,035 + HMPREF1058_RS15510 0.73 +0.9 901,083 + HMPREF1058_RS15510 0.75 +1.8 901,089 - HMPREF1058_RS15510 0.75 +1.1 901,091 - HMPREF1058_RS15510 0.75 +2.0 901,439 + HMPREF1058_RS15510 0.87 +1.9 901,440 - HMPREF1058_RS15510 0.87 +0.4 901,443 + HMPREF1058_RS15510 0.87 +1.5 901,444 - HMPREF1058_RS15510 0.88 +1.6 901,491 + HMPREF1058_RS15510 0.89 +0.8 901,494 + HMPREF1058_RS15510 0.89 -0.2 901,495 - HMPREF1058_RS15510 0.89 +1.8 901,495 - HMPREF1058_RS15510 0.89 -0.8 901,542 + +1.3 901,542 + +0.4 901,543 - +2.5 901,543 - +0.7 901,596 - +1.6 901,596 - +0.4 901,655 + +2.8 901,656 - +1.0 901,657 + +1.2 901,670 + -0.2 901,700 + -0.2 901,830 + -1.1 901,830 + +1.6 901,838 + -0.9 901,838 + +0.5 901,838 + -1.3 901,878 - -1.7 901,892 - +0.6 901,895 + +0.7 901,895 + +0.1 901,895 + -0.4 901,900 + +0.1 901,901 - -0.4 901,902 + +0.6 901,902 + -0.6 901,902 + +2.6 901,961 - HMPREF1058_RS15505 0.22 +0.6 901,970 + HMPREF1058_RS15505 0.25 +0.3 901,970 + HMPREF1058_RS15505 0.25 -0.4 901,977 + HMPREF1058_RS15505 0.27 +1.7 902,080 + HMPREF1058_RS15505 0.59 -0.2 902,109 + HMPREF1058_RS15505 0.68 +1.3 902,119 + HMPREF1058_RS15505 0.71 +0.5 902,206 - +0.1 902,208 - -0.3 902,208 - -1.4 902,232 + -3.3 902,256 + -0.2 902,310 + -0.4 902,340 + -0.7 902,340 + -0.3 902,368 - -0.4 902,525 - HMPREF1058_RS15500 0.14 +1.3 902,667 + HMPREF1058_RS15500 0.21 +0.5 902,687 - HMPREF1058_RS15500 0.23 +1.3 902,688 + HMPREF1058_RS15500 0.23 +0.1 902,689 - HMPREF1058_RS15500 0.23 -1.2 902,743 + HMPREF1058_RS15500 0.26 +0.2 902,757 + HMPREF1058_RS15500 0.26 -0.2 902,775 + HMPREF1058_RS15500 0.27 +1.1
Or see this region's nucleotide sequence