Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4308 and EX28DRAFT_4309 are separated by 370 nucleotides EX28DRAFT_4309 and EX28DRAFT_4310 are separated by 125 nucleotides
EX28DRAFT_4308: EX28DRAFT_4308 - ABC-type sugar transport systems, ATPase components, at 111,653 to 112,762
_4308
EX28DRAFT_4309: EX28DRAFT_4309 - Maltose-binding periplasmic proteins/domains, at 113,133 to 114,323
_4309
EX28DRAFT_4310: EX28DRAFT_4310 - ABC-type sugar transport systems, permease components, at 114,449 to 115,993
_4310
Position (kb)
113
114
115 Strain fitness (log2 ratio)
-1
0
1
2 at 112.198 kb on - strand, within EX28DRAFT_4308 at 112.400 kb on + strand, within EX28DRAFT_4308 at 112.477 kb on + strand, within EX28DRAFT_4308 at 112.477 kb on + strand, within EX28DRAFT_4308 at 112.477 kb on + strand, within EX28DRAFT_4308 at 112.478 kb on - strand, within EX28DRAFT_4308 at 112.478 kb on - strand, within EX28DRAFT_4308 at 112.503 kb on + strand, within EX28DRAFT_4308 at 112.512 kb on + strand, within EX28DRAFT_4308 at 112.512 kb on + strand, within EX28DRAFT_4308 at 112.513 kb on - strand, within EX28DRAFT_4308 at 112.639 kb on + strand, within EX28DRAFT_4308 at 112.640 kb on - strand, within EX28DRAFT_4308 at 112.811 kb on - strand at 113.066 kb on - strand at 113.066 kb on - strand at 113.094 kb on + strand at 113.094 kb on + strand at 113.094 kb on + strand at 113.094 kb on + strand at 113.094 kb on + strand at 113.095 kb on - strand at 113.095 kb on - strand at 113.095 kb on - strand at 113.095 kb on - strand at 113.095 kb on - strand at 113.095 kb on - strand at 113.095 kb on - strand at 113.098 kb on + strand at 113.098 kb on + strand at 113.099 kb on - strand at 113.133 kb on - strand at 113.139 kb on - strand at 113.260 kb on - strand, within EX28DRAFT_4309 at 113.260 kb on - strand, within EX28DRAFT_4309 at 113.640 kb on - strand, within EX28DRAFT_4309 at 113.673 kb on + strand, within EX28DRAFT_4309 at 113.673 kb on + strand, within EX28DRAFT_4309 at 113.737 kb on - strand, within EX28DRAFT_4309 at 113.934 kb on + strand, within EX28DRAFT_4309 at 114.170 kb on + strand, within EX28DRAFT_4309 at 114.312 kb on - strand at 114.314 kb on + strand at 114.314 kb on + strand at 114.315 kb on - strand at 114.317 kb on + strand at 114.317 kb on + strand at 114.317 kb on + strand at 114.317 kb on + strand at 114.321 kb on + strand at 114.322 kb on - strand at 114.329 kb on + strand at 114.330 kb on - strand at 114.357 kb on - strand at 114.546 kb on + strand at 114.546 kb on + strand at 114.547 kb on - strand at 114.547 kb on - strand at 114.551 kb on + strand at 114.551 kb on + strand at 114.556 kb on - strand at 114.566 kb on + strand at 114.566 kb on + strand at 114.595 kb on - strand at 114.635 kb on + strand, within EX28DRAFT_4310 at 114.636 kb on - strand, within EX28DRAFT_4310 at 114.636 kb on - strand, within EX28DRAFT_4310 at 114.648 kb on - strand, within EX28DRAFT_4310 at 114.704 kb on - strand, within EX28DRAFT_4310 at 114.721 kb on + strand, within EX28DRAFT_4310 at 114.729 kb on - strand, within EX28DRAFT_4310 at 114.729 kb on - strand, within EX28DRAFT_4310 at 114.788 kb on + strand, within EX28DRAFT_4310 at 114.789 kb on - strand, within EX28DRAFT_4310 at 114.821 kb on + strand, within EX28DRAFT_4310 at 114.875 kb on + strand, within EX28DRAFT_4310 at 114.875 kb on + strand, within EX28DRAFT_4310 at 114.875 kb on + strand, within EX28DRAFT_4310 at 114.876 kb on - strand, within EX28DRAFT_4310 at 114.876 kb on - strand, within EX28DRAFT_4310 at 114.876 kb on - strand, within EX28DRAFT_4310 at 114.878 kb on + strand, within EX28DRAFT_4310 at 114.878 kb on + strand, within EX28DRAFT_4310 at 114.879 kb on - strand, within EX28DRAFT_4310 at 114.879 kb on - strand, within EX28DRAFT_4310 at 114.879 kb on - strand, within EX28DRAFT_4310 at 115.079 kb on + strand, within EX28DRAFT_4310 at 115.079 kb on + strand, within EX28DRAFT_4310 at 115.080 kb on - strand, within EX28DRAFT_4310 at 115.080 kb on - strand, within EX28DRAFT_4310 at 115.080 kb on - strand, within EX28DRAFT_4310 at 115.082 kb on - strand, within EX28DRAFT_4310 at 115.131 kb on - strand, within EX28DRAFT_4310
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 112,198 - EX28DRAFT_4308 0.49 -0.5 112,400 + EX28DRAFT_4308 0.67 -1.2 112,477 + EX28DRAFT_4308 0.74 +0.8 112,477 + EX28DRAFT_4308 0.74 -1.1 112,477 + EX28DRAFT_4308 0.74 +0.1 112,478 - EX28DRAFT_4308 0.74 -0.3 112,478 - EX28DRAFT_4308 0.74 -0.4 112,503 + EX28DRAFT_4308 0.77 -0.1 112,512 + EX28DRAFT_4308 0.77 +0.2 112,512 + EX28DRAFT_4308 0.77 +0.1 112,513 - EX28DRAFT_4308 0.77 -0.1 112,639 + EX28DRAFT_4308 0.89 -0.4 112,640 - EX28DRAFT_4308 0.89 -0.1 112,811 - +0.3 113,066 - -0.5 113,066 - -0.3 113,094 + -0.2 113,094 + +0.2 113,094 + -1.2 113,094 + +0.4 113,094 + +0.2 113,095 - -0.3 113,095 - +0.4 113,095 - +0.3 113,095 - -0.1 113,095 - -0.1 113,095 - +0.7 113,095 - +0.8 113,098 + -1.1 113,098 + -0.3 113,099 - +0.3 113,133 - +1.9 113,139 - -0.7 113,260 - EX28DRAFT_4309 0.11 +0.1 113,260 - EX28DRAFT_4309 0.11 -0.2 113,640 - EX28DRAFT_4309 0.43 +0.0 113,673 + EX28DRAFT_4309 0.45 -0.1 113,673 + EX28DRAFT_4309 0.45 +0.4 113,737 - EX28DRAFT_4309 0.51 +0.4 113,934 + EX28DRAFT_4309 0.67 +0.1 114,170 + EX28DRAFT_4309 0.87 +0.7 114,312 - -0.0 114,314 + -0.2 114,314 + +1.4 114,315 - +0.5 114,317 + -0.2 114,317 + -0.1 114,317 + +0.2 114,317 + +0.2 114,321 + -0.2 114,322 - -0.2 114,329 + -0.4 114,330 - -0.2 114,357 - -0.1 114,546 + +0.7 114,546 + +0.4 114,547 - -1.0 114,547 - -0.1 114,551 + -0.1 114,551 + -0.4 114,556 - -0.0 114,566 + +0.3 114,566 + -0.1 114,595 - -1.5 114,635 + EX28DRAFT_4310 0.12 +0.1 114,636 - EX28DRAFT_4310 0.12 +0.1 114,636 - EX28DRAFT_4310 0.12 +0.3 114,648 - EX28DRAFT_4310 0.13 +0.8 114,704 - EX28DRAFT_4310 0.17 -0.3 114,721 + EX28DRAFT_4310 0.18 +0.1 114,729 - EX28DRAFT_4310 0.18 -0.4 114,729 - EX28DRAFT_4310 0.18 -0.5 114,788 + EX28DRAFT_4310 0.22 -1.1 114,789 - EX28DRAFT_4310 0.22 +0.1 114,821 + EX28DRAFT_4310 0.24 -0.0 114,875 + EX28DRAFT_4310 0.28 -0.7 114,875 + EX28DRAFT_4310 0.28 +0.4 114,875 + EX28DRAFT_4310 0.28 -0.4 114,876 - EX28DRAFT_4310 0.28 -1.2 114,876 - EX28DRAFT_4310 0.28 -0.1 114,876 - EX28DRAFT_4310 0.28 -0.3 114,878 + EX28DRAFT_4310 0.28 +0.9 114,878 + EX28DRAFT_4310 0.28 +0.2 114,879 - EX28DRAFT_4310 0.28 -0.2 114,879 - EX28DRAFT_4310 0.28 +0.0 114,879 - EX28DRAFT_4310 0.28 -0.0 115,079 + EX28DRAFT_4310 0.41 -0.1 115,079 + EX28DRAFT_4310 0.41 +0.5 115,080 - EX28DRAFT_4310 0.41 +0.1 115,080 - EX28DRAFT_4310 0.41 +0.3 115,080 - EX28DRAFT_4310 0.41 -0.5 115,082 - EX28DRAFT_4310 0.41 -0.0 115,131 - EX28DRAFT_4310 0.44 -0.5
Or see this region's nucleotide sequence