Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4023 and EX28DRAFT_4024 are separated by 197 nucleotides EX28DRAFT_4024 and EX28DRAFT_4025 are separated by 7 nucleotides EX28DRAFT_4025 and EX28DRAFT_4026 are separated by 4 nucleotides EX28DRAFT_4026 and EX28DRAFT_4027 are separated by 27 nucleotides
EX28DRAFT_4023: EX28DRAFT_4023 - potassium uptake protein, at 233,986 to 235,854
_4023
EX28DRAFT_4024: EX28DRAFT_4024 - ABC-type ribose transport system, auxiliary component, at 236,052 to 236,471
_4024
EX28DRAFT_4025: EX28DRAFT_4025 - ABC-type sugar transport system, ATPase component, at 236,479 to 237,984
_4025
EX28DRAFT_4026: EX28DRAFT_4026 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 237,989 to 238,954
_4026
EX28DRAFT_4027: EX28DRAFT_4027 - ABC-type sugar transport system, periplasmic component, at 238,982 to 239,872
_4027
Position (kb) 236
237
238 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 235.534 kb on + strand, within EX28DRAFT_4023 at 235.535 kb on - strand, within EX28DRAFT_4023 at 235.696 kb on - strand at 235.736 kb on - strand at 235.759 kb on + strand at 235.759 kb on + strand at 235.759 kb on + strand at 235.852 kb on + strand at 235.853 kb on - strand at 235.921 kb on + strand at 235.922 kb on - strand at 236.213 kb on - strand, within EX28DRAFT_4024 at 236.279 kb on + strand, within EX28DRAFT_4024 at 236.279 kb on + strand, within EX28DRAFT_4024 at 236.280 kb on - strand, within EX28DRAFT_4024 at 236.312 kb on + strand, within EX28DRAFT_4024 at 236.347 kb on + strand, within EX28DRAFT_4024 at 236.347 kb on + strand, within EX28DRAFT_4024 at 236.348 kb on - strand, within EX28DRAFT_4024 at 236.441 kb on + strand at 236.511 kb on + strand at 236.512 kb on - strand at 236.638 kb on + strand, within EX28DRAFT_4025 at 236.639 kb on - strand, within EX28DRAFT_4025 at 236.728 kb on - strand, within EX28DRAFT_4025 at 236.833 kb on + strand, within EX28DRAFT_4025 at 236.833 kb on + strand, within EX28DRAFT_4025 at 236.834 kb on - strand, within EX28DRAFT_4025 at 236.834 kb on - strand, within EX28DRAFT_4025 at 236.834 kb on - strand, within EX28DRAFT_4025 at 236.877 kb on + strand, within EX28DRAFT_4025 at 236.877 kb on + strand, within EX28DRAFT_4025 at 237.064 kb on + strand, within EX28DRAFT_4025 at 237.064 kb on + strand, within EX28DRAFT_4025 at 237.065 kb on - strand, within EX28DRAFT_4025 at 237.065 kb on - strand, within EX28DRAFT_4025 at 237.065 kb on - strand, within EX28DRAFT_4025 at 237.135 kb on + strand, within EX28DRAFT_4025 at 237.172 kb on - strand, within EX28DRAFT_4025 at 237.172 kb on - strand, within EX28DRAFT_4025 at 237.172 kb on - strand, within EX28DRAFT_4025 at 237.469 kb on + strand, within EX28DRAFT_4025 at 237.469 kb on + strand, within EX28DRAFT_4025 at 237.469 kb on + strand, within EX28DRAFT_4025 at 237.469 kb on + strand, within EX28DRAFT_4025 at 237.470 kb on - strand, within EX28DRAFT_4025 at 237.470 kb on - strand, within EX28DRAFT_4025 at 237.550 kb on + strand, within EX28DRAFT_4025 at 237.582 kb on + strand, within EX28DRAFT_4025 at 237.583 kb on - strand, within EX28DRAFT_4025 at 237.781 kb on + strand, within EX28DRAFT_4025 at 237.782 kb on - strand, within EX28DRAFT_4025 at 237.784 kb on - strand, within EX28DRAFT_4025 at 237.851 kb on + strand at 237.854 kb on + strand at 237.854 kb on + strand at 237.855 kb on - strand at 237.982 kb on + strand at 237.983 kb on - strand at 237.983 kb on - strand at 237.994 kb on + strand at 238.020 kb on - strand at 238.020 kb on - strand at 238.121 kb on - strand, within EX28DRAFT_4026 at 238.121 kb on - strand, within EX28DRAFT_4026 at 238.528 kb on + strand, within EX28DRAFT_4026 at 238.529 kb on - strand, within EX28DRAFT_4026 at 238.551 kb on - strand, within EX28DRAFT_4026 at 238.551 kb on - strand, within EX28DRAFT_4026 at 238.551 kb on - strand, within EX28DRAFT_4026 at 238.551 kb on - strand, within EX28DRAFT_4026 at 238.580 kb on + strand, within EX28DRAFT_4026 at 238.582 kb on + strand, within EX28DRAFT_4026 at 238.582 kb on + strand, within EX28DRAFT_4026 at 238.582 kb on + strand, within EX28DRAFT_4026 at 238.582 kb on + strand, within EX28DRAFT_4026 at 238.583 kb on - strand, within EX28DRAFT_4026 at 238.583 kb on - strand, within EX28DRAFT_4026 at 238.583 kb on - strand, within EX28DRAFT_4026 at 238.583 kb on - strand, within EX28DRAFT_4026 at 238.583 kb on - strand, within EX28DRAFT_4026 at 238.586 kb on + strand, within EX28DRAFT_4026 at 238.587 kb on - strand, within EX28DRAFT_4026 at 238.587 kb on - strand, within EX28DRAFT_4026 at 238.587 kb on - strand, within EX28DRAFT_4026 at 238.640 kb on - strand, within EX28DRAFT_4026 at 238.640 kb on - strand, within EX28DRAFT_4026 at 238.640 kb on - strand, within EX28DRAFT_4026 at 238.652 kb on - strand, within EX28DRAFT_4026 at 238.658 kb on + strand, within EX28DRAFT_4026 at 238.659 kb on - strand, within EX28DRAFT_4026 at 238.745 kb on + strand, within EX28DRAFT_4026 at 238.873 kb on - strand at 238.886 kb on + strand at 238.935 kb on + strand at 238.965 kb on + strand at 238.977 kb on + strand at 238.977 kb on + strand at 238.977 kb on + strand at 238.977 kb on + strand at 238.977 kb on + strand at 238.977 kb on + strand at 238.977 kb on + strand at 238.978 kb on - strand at 238.978 kb on - strand at 238.978 kb on - strand at 238.978 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 235,534 + EX28DRAFT_4023 0.83 +0.2 235,535 - EX28DRAFT_4023 0.83 -0.4 235,696 - +0.2 235,736 - +0.9 235,759 + -0.6 235,759 + +0.2 235,759 + -0.2 235,852 + -0.1 235,853 - +0.0 235,921 + -1.2 235,922 - +2.5 236,213 - EX28DRAFT_4024 0.38 +0.6 236,279 + EX28DRAFT_4024 0.54 -1.0 236,279 + EX28DRAFT_4024 0.54 -0.4 236,280 - EX28DRAFT_4024 0.54 +0.3 236,312 + EX28DRAFT_4024 0.62 -0.8 236,347 + EX28DRAFT_4024 0.70 -0.2 236,347 + EX28DRAFT_4024 0.70 -0.1 236,348 - EX28DRAFT_4024 0.70 -0.1 236,441 + +0.2 236,511 + +0.2 236,512 - +1.5 236,638 + EX28DRAFT_4025 0.11 -1.2 236,639 - EX28DRAFT_4025 0.11 +0.8 236,728 - EX28DRAFT_4025 0.17 -0.1 236,833 + EX28DRAFT_4025 0.24 -1.0 236,833 + EX28DRAFT_4025 0.24 +0.5 236,834 - EX28DRAFT_4025 0.24 +0.7 236,834 - EX28DRAFT_4025 0.24 -0.2 236,834 - EX28DRAFT_4025 0.24 -0.2 236,877 + EX28DRAFT_4025 0.26 -0.8 236,877 + EX28DRAFT_4025 0.26 -0.3 237,064 + EX28DRAFT_4025 0.39 -1.0 237,064 + EX28DRAFT_4025 0.39 -0.5 237,065 - EX28DRAFT_4025 0.39 +0.2 237,065 - EX28DRAFT_4025 0.39 -2.2 237,065 - EX28DRAFT_4025 0.39 +2.2 237,135 + EX28DRAFT_4025 0.44 +1.3 237,172 - EX28DRAFT_4025 0.46 -0.2 237,172 - EX28DRAFT_4025 0.46 +0.2 237,172 - EX28DRAFT_4025 0.46 -0.3 237,469 + EX28DRAFT_4025 0.66 -4.0 237,469 + EX28DRAFT_4025 0.66 -2.5 237,469 + EX28DRAFT_4025 0.66 -1.2 237,469 + EX28DRAFT_4025 0.66 -2.8 237,470 - EX28DRAFT_4025 0.66 +0.2 237,470 - EX28DRAFT_4025 0.66 -0.3 237,550 + EX28DRAFT_4025 0.71 -1.6 237,582 + EX28DRAFT_4025 0.73 -0.4 237,583 - EX28DRAFT_4025 0.73 +0.1 237,781 + EX28DRAFT_4025 0.86 -1.6 237,782 - EX28DRAFT_4025 0.87 -1.0 237,784 - EX28DRAFT_4025 0.87 +0.1 237,851 + -1.6 237,854 + -1.9 237,854 + -0.3 237,855 - -0.3 237,982 + -1.1 237,983 - +1.7 237,983 - -0.2 237,994 + -0.0 238,020 - -0.1 238,020 - +0.2 238,121 - EX28DRAFT_4026 0.14 +0.0 238,121 - EX28DRAFT_4026 0.14 +0.7 238,528 + EX28DRAFT_4026 0.56 -1.3 238,529 - EX28DRAFT_4026 0.56 +0.4 238,551 - EX28DRAFT_4026 0.58 +0.2 238,551 - EX28DRAFT_4026 0.58 -0.0 238,551 - EX28DRAFT_4026 0.58 +1.1 238,551 - EX28DRAFT_4026 0.58 -0.1 238,580 + EX28DRAFT_4026 0.61 -1.6 238,582 + EX28DRAFT_4026 0.61 -1.9 238,582 + EX28DRAFT_4026 0.61 -0.3 238,582 + EX28DRAFT_4026 0.61 -1.6 238,582 + EX28DRAFT_4026 0.61 -1.8 238,583 - EX28DRAFT_4026 0.61 +0.6 238,583 - EX28DRAFT_4026 0.61 +0.8 238,583 - EX28DRAFT_4026 0.61 +0.0 238,583 - EX28DRAFT_4026 0.61 +0.2 238,583 - EX28DRAFT_4026 0.61 +0.3 238,586 + EX28DRAFT_4026 0.62 -0.9 238,587 - EX28DRAFT_4026 0.62 +0.4 238,587 - EX28DRAFT_4026 0.62 -0.7 238,587 - EX28DRAFT_4026 0.62 -0.1 238,640 - EX28DRAFT_4026 0.67 -0.7 238,640 - EX28DRAFT_4026 0.67 -0.2 238,640 - EX28DRAFT_4026 0.67 +0.3 238,652 - EX28DRAFT_4026 0.69 +0.1 238,658 + EX28DRAFT_4026 0.69 +1.1 238,659 - EX28DRAFT_4026 0.69 +0.7 238,745 + EX28DRAFT_4026 0.78 -1.6 238,873 - +0.6 238,886 + -1.0 238,935 + -1.5 238,965 + -1.6 238,977 + -1.2 238,977 + -1.2 238,977 + -1.4 238,977 + -1.0 238,977 + -1.0 238,977 + -1.0 238,977 + -0.6 238,978 - +0.5 238,978 - +0.2 238,978 - +0.5 238,978 - +0.1
Or see this region's nucleotide sequence