Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2501 and EX28DRAFT_2502 are separated by 101 nucleotides EX28DRAFT_2502 and EX28DRAFT_2503 overlap by 4 nucleotides EX28DRAFT_2503 and EX28DRAFT_2504 are separated by 2 nucleotides EX28DRAFT_2504 and EX28DRAFT_2505 are separated by 218 nucleotides
EX28DRAFT_2501: EX28DRAFT_2501 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 2,532,535 to 2,533,995
_2501
EX28DRAFT_2502: EX28DRAFT_2502 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 2,534,097 to 2,534,807
_2502
EX28DRAFT_2503: EX28DRAFT_2503 - ribosomal protein L36, bacterial type, at 2,534,804 to 2,534,944
_2503
EX28DRAFT_2504: EX28DRAFT_2504 - ribosomal protein L31, at 2,534,947 to 2,535,207
_2504
EX28DRAFT_2505: EX28DRAFT_2505 - Predicted signal transduction protein containing sensor and EAL domains, at 2,535,426 to 2,536,991
_2505
Position (kb)
2534
2535
2536 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2533.987 kb on + strand at 2533.988 kb on - strand at 2534.248 kb on - strand, within EX28DRAFT_2502 at 2534.509 kb on - strand, within EX28DRAFT_2502 at 2534.523 kb on + strand, within EX28DRAFT_2502 at 2534.524 kb on - strand, within EX28DRAFT_2502 at 2534.650 kb on + strand, within EX28DRAFT_2502 at 2534.849 kb on - strand, within EX28DRAFT_2503 at 2534.866 kb on - strand, within EX28DRAFT_2503 at 2534.889 kb on - strand, within EX28DRAFT_2503 at 2534.932 kb on + strand at 2534.932 kb on + strand at 2534.933 kb on - strand at 2534.937 kb on - strand at 2535.031 kb on - strand, within EX28DRAFT_2504 at 2535.077 kb on + strand, within EX28DRAFT_2504 at 2535.077 kb on + strand, within EX28DRAFT_2504 at 2535.078 kb on - strand, within EX28DRAFT_2504 at 2535.078 kb on - strand, within EX28DRAFT_2504 at 2535.121 kb on - strand, within EX28DRAFT_2504 at 2535.144 kb on - strand, within EX28DRAFT_2504 at 2535.144 kb on - strand, within EX28DRAFT_2504 at 2535.211 kb on - strand at 2535.230 kb on - strand at 2535.237 kb on - strand at 2535.237 kb on - strand at 2535.245 kb on - strand at 2535.248 kb on - strand at 2535.340 kb on - strand at 2535.343 kb on + strand at 2535.343 kb on + strand at 2535.343 kb on + strand at 2535.344 kb on - strand at 2535.405 kb on + strand at 2535.463 kb on + strand at 2535.464 kb on - strand at 2535.464 kb on - strand at 2535.468 kb on - strand at 2535.468 kb on - strand at 2535.552 kb on - strand at 2535.555 kb on + strand at 2535.555 kb on + strand at 2535.556 kb on - strand at 2535.556 kb on - strand at 2535.556 kb on - strand at 2535.647 kb on + strand, within EX28DRAFT_2505 at 2535.696 kb on + strand, within EX28DRAFT_2505 at 2535.696 kb on + strand, within EX28DRAFT_2505 at 2535.714 kb on + strand, within EX28DRAFT_2505 at 2535.714 kb on + strand, within EX28DRAFT_2505 at 2535.715 kb on - strand, within EX28DRAFT_2505 at 2535.715 kb on - strand, within EX28DRAFT_2505 at 2535.715 kb on - strand, within EX28DRAFT_2505 at 2535.716 kb on + strand, within EX28DRAFT_2505 at 2535.791 kb on + strand, within EX28DRAFT_2505 at 2535.795 kb on - strand, within EX28DRAFT_2505 at 2535.808 kb on - strand, within EX28DRAFT_2505 at 2535.852 kb on + strand, within EX28DRAFT_2505 at 2535.879 kb on + strand, within EX28DRAFT_2505 at 2535.880 kb on - strand, within EX28DRAFT_2505 at 2535.976 kb on + strand, within EX28DRAFT_2505 at 2536.050 kb on + strand, within EX28DRAFT_2505 at 2536.065 kb on + strand, within EX28DRAFT_2505 at 2536.066 kb on - strand, within EX28DRAFT_2505 at 2536.066 kb on - strand, within EX28DRAFT_2505 at 2536.082 kb on - strand, within EX28DRAFT_2505 at 2536.097 kb on + strand, within EX28DRAFT_2505 at 2536.183 kb on + strand, within EX28DRAFT_2505
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,533,987 + -0.0 2,533,988 - +0.1 2,534,248 - EX28DRAFT_2502 0.21 -0.5 2,534,509 - EX28DRAFT_2502 0.58 -0.4 2,534,523 + EX28DRAFT_2502 0.60 +1.0 2,534,524 - EX28DRAFT_2502 0.60 +0.2 2,534,650 + EX28DRAFT_2502 0.78 -1.2 2,534,849 - EX28DRAFT_2503 0.32 +0.3 2,534,866 - EX28DRAFT_2503 0.44 +0.1 2,534,889 - EX28DRAFT_2503 0.60 -0.3 2,534,932 + +0.1 2,534,932 + -0.3 2,534,933 - -1.0 2,534,937 - +0.4 2,535,031 - EX28DRAFT_2504 0.32 +0.0 2,535,077 + EX28DRAFT_2504 0.50 -0.1 2,535,077 + EX28DRAFT_2504 0.50 +0.3 2,535,078 - EX28DRAFT_2504 0.50 -0.1 2,535,078 - EX28DRAFT_2504 0.50 -0.2 2,535,121 - EX28DRAFT_2504 0.67 -0.4 2,535,144 - EX28DRAFT_2504 0.75 -1.4 2,535,144 - EX28DRAFT_2504 0.75 -0.7 2,535,211 - +0.1 2,535,230 - -1.0 2,535,237 - +0.8 2,535,237 - +0.7 2,535,245 - +0.3 2,535,248 - -0.3 2,535,340 - -0.1 2,535,343 + -0.3 2,535,343 + -0.1 2,535,343 + +0.6 2,535,344 - +0.7 2,535,405 + -0.4 2,535,463 + +0.1 2,535,464 - -0.9 2,535,464 - +0.2 2,535,468 - -0.5 2,535,468 - +0.1 2,535,552 - +0.4 2,535,555 + +0.6 2,535,555 + -1.0 2,535,556 - -0.7 2,535,556 - +0.2 2,535,556 - -0.0 2,535,647 + EX28DRAFT_2505 0.14 +0.3 2,535,696 + EX28DRAFT_2505 0.17 +0.3 2,535,696 + EX28DRAFT_2505 0.17 +0.3 2,535,714 + EX28DRAFT_2505 0.18 +0.5 2,535,714 + EX28DRAFT_2505 0.18 -0.2 2,535,715 - EX28DRAFT_2505 0.18 -0.0 2,535,715 - EX28DRAFT_2505 0.18 +0.1 2,535,715 - EX28DRAFT_2505 0.18 +0.2 2,535,716 + EX28DRAFT_2505 0.19 +4.3 2,535,791 + EX28DRAFT_2505 0.23 +0.3 2,535,795 - EX28DRAFT_2505 0.24 -0.5 2,535,808 - EX28DRAFT_2505 0.24 -0.1 2,535,852 + EX28DRAFT_2505 0.27 +0.1 2,535,879 + EX28DRAFT_2505 0.29 -0.4 2,535,880 - EX28DRAFT_2505 0.29 +0.4 2,535,976 + EX28DRAFT_2505 0.35 -0.1 2,536,050 + EX28DRAFT_2505 0.40 -0.7 2,536,065 + EX28DRAFT_2505 0.41 +0.3 2,536,066 - EX28DRAFT_2505 0.41 -0.5 2,536,066 - EX28DRAFT_2505 0.41 +0.2 2,536,082 - EX28DRAFT_2505 0.42 +0.3 2,536,097 + EX28DRAFT_2505 0.43 -0.3 2,536,183 + EX28DRAFT_2505 0.48 +0.4
Or see this region's nucleotide sequence