Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2310

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
2,683,675	-		Psyr_2308	0.88	-0.1
2,683,692	+				+0.6
2,683,692	+				+0.4
2,683,692	+				+2.2
2,683,692	+				+0.4
2,683,693	-				-1.7
2,683,928	+		Psyr_2309	0.31	-0.2
2,683,928	+		Psyr_2309	0.31	-0.6
2,683,928	+		Psyr_2309	0.31	+0.6
2,683,929	-		Psyr_2309	0.31	+0.9
2,683,929	-		Psyr_2309	0.31	+0.6
2,683,929	-		Psyr_2309	0.31	-0.8
2,683,929	-		Psyr_2309	0.31	+0.9
2,683,929	-		Psyr_2309	0.31	-1.4
2,684,102	+		Psyr_2309	0.63	+0.6
2,684,112	+		Psyr_2309	0.64	-0.7
2,684,129	+		Psyr_2309	0.68	+0.9
2,684,150	+		Psyr_2309	0.71	+1.1
2,684,150	+		Psyr_2309	0.71	+2.0
2,684,284	+				-0.2
2,684,284	+				-0.3
2,684,285	-				-0.6
2,684,285	-				-1.3
2,684,309	-				+0.6
2,684,367	-				-0.0
2,684,416	+				+0.4
2,684,417	-				-0.5
2,684,597	+				+1.2
2,684,598	-				-2.0
2,684,654	+		Psyr_2310	0.19	-0.3
2,684,654	+		Psyr_2310	0.19	-0.3
2,684,654	+		Psyr_2310	0.19	-0.4
2,684,654	+		Psyr_2310	0.19	-0.3
2,684,655	-		Psyr_2310	0.19	+0.6
2,684,655	-		Psyr_2310	0.19	+0.6
2,684,655	-		Psyr_2310	0.19	+0.4
2,684,655	-		Psyr_2310	0.19	+1.0
2,684,770	+		Psyr_2310	0.56	+0.6
2,684,771	-		Psyr_2310	0.57	+1.6
2,684,898	+				+1.0
2,684,899	-				+1.6
2,684,926	+				+0.6
2,684,927	-				+0.4
2,684,927	-				-0.9
2,684,929	-				-1.9
2,684,929	-				+1.8
2,684,954	+				+0.6
2,684,955	-				-2.0
2,685,202	-		Psyr_2311	0.23	-1.1
2,685,202	-		Psyr_2311	0.23	-0.6
2,685,202	-		Psyr_2311	0.23	-1.0
2,685,259	-		Psyr_2311	0.30	+0.1
2,685,283	-		Psyr_2311	0.33	-0.4
2,685,339	+		Psyr_2311	0.39	-1.5
2,685,429	+		Psyr_2311	0.50	+0.1
2,685,430	-		Psyr_2311	0.50	-0.3
2,685,430	-		Psyr_2311	0.50	+1.6
2,685,430	-		Psyr_2311	0.50	-0.6
2,685,490	-		Psyr_2311	0.57	-0.2
2,685,703	-		Psyr_2311	0.82	-0.4
2,685,900	+				+1.8
2,685,900	+				-1.9
2,685,900	+				-0.2
2,685,901	-				-0.7
2,685,901	-				+0.9
2,685,901	-				+0.7
2,685,901	-				-0.8