Experiment: copper (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_628 and Pf1N1B4_629 are separated by 13 nucleotides Pf1N1B4_629 and Pf1N1B4_630 are separated by 166 nucleotides Pf1N1B4_630 and Pf1N1B4_631 are separated by 81 nucleotides Pf1N1B4_631 and Pf1N1B4_632 are separated by 52 nucleotides
Pf1N1B4_628 - Queuosine Biosynthesis QueC ATPase, at 725,880 to 726,560
_628
Pf1N1B4_629 - Queuosine Biosynthesis QueE Radical SAM, at 726,574 to 727,221
_629
Pf1N1B4_630 - TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain, at 727,388 to 728,152
_630
Pf1N1B4_631 - 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor, at 728,234 to 728,731
_631
Pf1N1B4_632 - tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins, at 728,784 to 730,052
_632
Position (kb) 727
728
729 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 726.446 kb on - strand, within Pf1N1B4_628 at 726.463 kb on + strand, within Pf1N1B4_628 at 726.463 kb on + strand, within Pf1N1B4_628 at 726.463 kb on + strand, within Pf1N1B4_628 at 726.464 kb on - strand, within Pf1N1B4_628 at 726.464 kb on - strand, within Pf1N1B4_628 at 726.602 kb on + strand at 726.602 kb on + strand at 726.602 kb on + strand at 726.603 kb on - strand at 726.603 kb on - strand at 726.603 kb on - strand at 726.603 kb on - strand at 726.606 kb on + strand at 726.606 kb on + strand at 726.606 kb on + strand at 726.606 kb on + strand at 726.606 kb on + strand at 726.606 kb on + strand at 726.607 kb on - strand at 726.607 kb on - strand at 726.607 kb on - strand at 726.607 kb on - strand at 726.607 kb on - strand at 726.607 kb on - strand at 726.607 kb on - strand at 726.607 kb on - strand at 726.607 kb on - strand at 726.607 kb on - strand at 726.607 kb on - strand at 726.761 kb on + strand, within Pf1N1B4_629 at 726.791 kb on - strand, within Pf1N1B4_629 at 727.019 kb on + strand, within Pf1N1B4_629 at 727.020 kb on - strand, within Pf1N1B4_629 at 727.221 kb on + strand at 727.221 kb on + strand at 727.243 kb on + strand at 727.243 kb on + strand at 727.243 kb on + strand at 727.244 kb on - strand at 727.244 kb on - strand at 727.318 kb on - strand at 727.389 kb on + strand at 727.389 kb on + strand at 727.389 kb on + strand at 727.390 kb on - strand at 727.390 kb on - strand at 727.390 kb on - strand at 727.390 kb on - strand at 727.390 kb on - strand at 727.390 kb on - strand at 727.390 kb on - strand at 727.390 kb on - strand at 727.519 kb on - strand, within Pf1N1B4_630 at 727.740 kb on + strand at 727.740 kb on + strand, within Pf1N1B4_630 at 727.740 kb on + strand, within Pf1N1B4_630 at 727.740 kb on + strand, within Pf1N1B4_630 at 727.741 kb on - strand, within Pf1N1B4_630 at 727.741 kb on - strand, within Pf1N1B4_630 at 727.741 kb on - strand, within Pf1N1B4_630 at 727.741 kb on - strand, within Pf1N1B4_630 at 727.741 kb on - strand, within Pf1N1B4_630 at 727.741 kb on - strand, within Pf1N1B4_630 at 727.744 kb on - strand, within Pf1N1B4_630 at 727.744 kb on - strand, within Pf1N1B4_630 at 727.744 kb on - strand, within Pf1N1B4_630 at 727.744 kb on - strand, within Pf1N1B4_630 at 727.867 kb on + strand, within Pf1N1B4_630 at 727.901 kb on + strand, within Pf1N1B4_630 at 727.902 kb on - strand, within Pf1N1B4_630 at 728.077 kb on - strand at 728.114 kb on - strand at 728.114 kb on - strand at 728.114 kb on - strand at 728.114 kb on - strand at 728.114 kb on - strand at 728.114 kb on - strand at 728.114 kb on - strand at 728.129 kb on - strand at 728.129 kb on - strand at 728.205 kb on - strand at 728.205 kb on - strand at 728.205 kb on - strand at 728.205 kb on - strand at 728.205 kb on - strand at 728.205 kb on - strand at 728.235 kb on + strand at 728.236 kb on - strand at 728.236 kb on - strand at 728.236 kb on - strand at 728.236 kb on - strand at 728.236 kb on - strand at 728.240 kb on - strand at 728.240 kb on - strand at 728.240 kb on - strand at 728.240 kb on - strand at 728.240 kb on - strand at 728.240 kb on - strand at 728.240 kb on - strand at 728.240 kb on - strand at 728.240 kb on - strand at 728.240 kb on - strand at 728.240 kb on - strand at 728.240 kb on - strand at 728.762 kb on - strand at 728.766 kb on - strand at 728.766 kb on - strand at 728.766 kb on - strand at 728.795 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM remove 726,446 - Pf1N1B4_628 0.83 -1.3 726,463 + Pf1N1B4_628 0.86 +0.1 726,463 + Pf1N1B4_628 0.86 +1.0 726,463 + Pf1N1B4_628 0.86 -0.6 726,464 - Pf1N1B4_628 0.86 -1.1 726,464 - Pf1N1B4_628 0.86 -0.2 726,602 + -3.0 726,602 + -0.2 726,602 + -0.1 726,603 - +1.3 726,603 - +0.7 726,603 - -1.1 726,603 - -0.3 726,606 + -1.7 726,606 + +1.0 726,606 + -1.2 726,606 + -1.4 726,606 + -0.7 726,606 + -0.1 726,607 - +0.3 726,607 - -0.3 726,607 - +0.8 726,607 - +0.2 726,607 - -1.2 726,607 - +1.3 726,607 - +1.7 726,607 - -1.3 726,607 - -1.1 726,607 - +1.0 726,607 - +2.0 726,761 + Pf1N1B4_629 0.29 -0.1 726,791 - Pf1N1B4_629 0.33 +0.9 727,019 + Pf1N1B4_629 0.69 -1.6 727,020 - Pf1N1B4_629 0.69 -0.9 727,221 + +1.1 727,221 + +0.0 727,243 + +1.8 727,243 + -0.5 727,243 + -0.6 727,244 - -1.7 727,244 - -0.4 727,318 - +0.7 727,389 + +0.8 727,389 + -0.6 727,389 + +0.8 727,390 - +0.8 727,390 - -0.3 727,390 - -1.1 727,390 - -1.9 727,390 - +0.1 727,390 - +0.7 727,390 - +0.0 727,390 - +1.0 727,519 - Pf1N1B4_630 0.17 -1.3 727,740 + -0.3 727,740 + Pf1N1B4_630 0.46 -0.5 727,740 + Pf1N1B4_630 0.46 +0.3 727,740 + Pf1N1B4_630 0.46 -0.9 727,741 - Pf1N1B4_630 0.46 -0.3 727,741 - Pf1N1B4_630 0.46 -1.6 727,741 - Pf1N1B4_630 0.46 -0.7 727,741 - Pf1N1B4_630 0.46 -1.6 727,741 - Pf1N1B4_630 0.46 +0.4 727,741 - Pf1N1B4_630 0.46 +0.3 727,744 - Pf1N1B4_630 0.47 +0.8 727,744 - Pf1N1B4_630 0.47 -0.2 727,744 - Pf1N1B4_630 0.47 -0.6 727,744 - Pf1N1B4_630 0.47 -2.2 727,867 + Pf1N1B4_630 0.63 -0.2 727,901 + Pf1N1B4_630 0.67 -1.8 727,902 - Pf1N1B4_630 0.67 -1.9 728,077 - -1.2 728,114 - -1.6 728,114 - -0.3 728,114 - +0.1 728,114 - -0.5 728,114 - -1.3 728,114 - -2.2 728,114 - -1.1 728,129 - -0.2 728,129 - -2.2 728,205 - -2.4 728,205 - -1.0 728,205 - -1.6 728,205 - -1.2 728,205 - -1.1 728,205 - +0.8 728,235 + -1.3 728,236 - -0.4 728,236 - +0.9 728,236 - -0.4 728,236 - -1.4 728,236 - -0.9 728,240 - -0.8 728,240 - -0.2 728,240 - +0.7 728,240 - -1.7 728,240 - -0.3 728,240 - +0.2 728,240 - +0.2 728,240 - +0.4 728,240 - -0.3 728,240 - -0.8 728,240 - -0.3 728,240 - -1.1 728,762 - -0.9 728,766 - -0.6 728,766 - -0.2 728,766 - -0.5 728,795 - +0.4
Or see this region's nucleotide sequence