Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18700 and HMPREF1058_RS18695 are separated by 87 nucleotides HMPREF1058_RS18695 and HMPREF1058_RS18690 are separated by 2 nucleotides
HMPREF1058_RS18700: HMPREF1058_RS18700 - class I SAM-dependent methyltransferase, at 98,321 to 99,055
_RS18700
HMPREF1058_RS18695: HMPREF1058_RS18695 - F0F1 ATP synthase subunit gamma, at 99,143 to 100,012
_RS18695
HMPREF1058_RS18690: HMPREF1058_RS18690 - F0F1 ATP synthase subunit alpha, at 100,015 to 101,607
_RS18690
Position (kb) 99
100
101 Strain fitness (log2 ratio) -2
-1
0
1
2 at 98.159 kb on + strand at 98.160 kb on - strand at 98.160 kb on - strand at 98.177 kb on - strand at 98.213 kb on + strand at 98.213 kb on + strand at 98.223 kb on - strand at 98.228 kb on - strand at 98.228 kb on - strand at 98.261 kb on + strand at 98.264 kb on + strand at 98.401 kb on + strand, within HMPREF1058_RS18700 at 98.401 kb on + strand, within HMPREF1058_RS18700 at 98.402 kb on - strand, within HMPREF1058_RS18700 at 98.406 kb on + strand, within HMPREF1058_RS18700 at 98.407 kb on - strand, within HMPREF1058_RS18700 at 98.586 kb on + strand, within HMPREF1058_RS18700 at 98.616 kb on + strand, within HMPREF1058_RS18700 at 98.622 kb on + strand, within HMPREF1058_RS18700 at 98.797 kb on + strand, within HMPREF1058_RS18700 at 98.798 kb on - strand, within HMPREF1058_RS18700 at 98.942 kb on + strand, within HMPREF1058_RS18700 at 99.020 kb on + strand at 99.027 kb on - strand at 99.027 kb on - strand at 99.060 kb on + strand at 99.063 kb on - strand at 99.165 kb on - strand at 99.165 kb on - strand at 99.206 kb on - strand at 99.369 kb on - strand, within HMPREF1058_RS18695 at 99.470 kb on + strand, within HMPREF1058_RS18695 at 99.471 kb on - strand, within HMPREF1058_RS18695 at 99.515 kb on + strand, within HMPREF1058_RS18695 at 99.696 kb on + strand, within HMPREF1058_RS18695 at 99.697 kb on - strand, within HMPREF1058_RS18695 at 99.731 kb on - strand, within HMPREF1058_RS18695 at 99.968 kb on - strand at 99.971 kb on + strand at 100.066 kb on - strand at 100.066 kb on - strand at 100.076 kb on - strand at 100.076 kb on - strand at 100.106 kb on - strand at 100.106 kb on - strand at 100.186 kb on + strand, within HMPREF1058_RS18690 at 100.203 kb on + strand, within HMPREF1058_RS18690 at 100.204 kb on - strand, within HMPREF1058_RS18690 at 100.288 kb on - strand, within HMPREF1058_RS18690 at 100.390 kb on - strand, within HMPREF1058_RS18690 at 100.426 kb on - strand, within HMPREF1058_RS18690 at 100.426 kb on - strand, within HMPREF1058_RS18690 at 100.505 kb on - strand, within HMPREF1058_RS18690 at 100.610 kb on - strand, within HMPREF1058_RS18690 at 100.710 kb on - strand, within HMPREF1058_RS18690 at 100.805 kb on + strand, within HMPREF1058_RS18690 at 100.805 kb on + strand, within HMPREF1058_RS18690 at 100.805 kb on + strand, within HMPREF1058_RS18690 at 100.805 kb on + strand, within HMPREF1058_RS18690 at 100.806 kb on - strand, within HMPREF1058_RS18690 at 100.811 kb on - strand, within HMPREF1058_RS18690 at 100.841 kb on + strand, within HMPREF1058_RS18690 at 100.913 kb on - strand, within HMPREF1058_RS18690 at 100.923 kb on + strand, within HMPREF1058_RS18690 at 100.923 kb on + strand, within HMPREF1058_RS18690 at 100.924 kb on - strand, within HMPREF1058_RS18690 at 100.997 kb on - strand, within HMPREF1058_RS18690 at 101.012 kb on - strand, within HMPREF1058_RS18690
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 98,159 + +1.7 98,160 - +2.6 98,160 - -0.2 98,177 - -0.4 98,213 + -0.1 98,213 + +1.8 98,223 - +0.4 98,228 - -0.5 98,228 - +0.9 98,261 + +2.2 98,264 + -0.0 98,401 + HMPREF1058_RS18700 0.11 +0.3 98,401 + HMPREF1058_RS18700 0.11 -0.7 98,402 - HMPREF1058_RS18700 0.11 -0.9 98,406 + HMPREF1058_RS18700 0.12 -0.1 98,407 - HMPREF1058_RS18700 0.12 +0.1 98,586 + HMPREF1058_RS18700 0.36 +0.3 98,616 + HMPREF1058_RS18700 0.40 -0.3 98,622 + HMPREF1058_RS18700 0.41 -0.5 98,797 + HMPREF1058_RS18700 0.65 +0.1 98,798 - HMPREF1058_RS18700 0.65 -0.0 98,942 + HMPREF1058_RS18700 0.84 -0.4 99,020 + -0.4 99,027 - +1.1 99,027 - +1.5 99,060 + +0.1 99,063 - -0.2 99,165 - +0.4 99,165 - -0.6 99,206 - +1.1 99,369 - HMPREF1058_RS18695 0.26 -0.7 99,470 + HMPREF1058_RS18695 0.38 -2.6 99,471 - HMPREF1058_RS18695 0.38 +1.6 99,515 + HMPREF1058_RS18695 0.43 -1.7 99,696 + HMPREF1058_RS18695 0.64 -1.2 99,697 - HMPREF1058_RS18695 0.64 -1.2 99,731 - HMPREF1058_RS18695 0.68 -2.0 99,968 - -0.7 99,971 + -2.0 100,066 - -0.6 100,066 - +2.1 100,076 - -0.7 100,076 - -2.4 100,106 - +0.4 100,106 - -0.8 100,186 + HMPREF1058_RS18690 0.11 -0.1 100,203 + HMPREF1058_RS18690 0.12 -1.1 100,204 - HMPREF1058_RS18690 0.12 +1.2 100,288 - HMPREF1058_RS18690 0.17 -2.3 100,390 - HMPREF1058_RS18690 0.24 -0.9 100,426 - HMPREF1058_RS18690 0.26 +0.1 100,426 - HMPREF1058_RS18690 0.26 +1.8 100,505 - HMPREF1058_RS18690 0.31 -0.7 100,610 - HMPREF1058_RS18690 0.37 -0.5 100,710 - HMPREF1058_RS18690 0.44 -0.0 100,805 + HMPREF1058_RS18690 0.50 -0.3 100,805 + HMPREF1058_RS18690 0.50 -0.1 100,805 + HMPREF1058_RS18690 0.50 +0.0 100,805 + HMPREF1058_RS18690 0.50 +0.3 100,806 - HMPREF1058_RS18690 0.50 -0.1 100,811 - HMPREF1058_RS18690 0.50 -0.4 100,841 + HMPREF1058_RS18690 0.52 +0.7 100,913 - HMPREF1058_RS18690 0.56 -0.1 100,923 + HMPREF1058_RS18690 0.57 -0.2 100,923 + HMPREF1058_RS18690 0.57 -0.4 100,924 - HMPREF1058_RS18690 0.57 -0.0 100,997 - HMPREF1058_RS18690 0.62 +0.1 101,012 - HMPREF1058_RS18690 0.63 -0.0
Or see this region's nucleotide sequence