Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14385

Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
1,214,045	+		HMPREF1058_RS14395	0.61	+0.1
1,214,046	-		HMPREF1058_RS14395	0.61	-0.2
1,214,133	+				-0.5
1,214,134	-		HMPREF1058_RS14395	0.74	-2.1
1,214,135	+		HMPREF1058_RS14395	0.74	+0.4
1,214,141	-		HMPREF1058_RS14395	0.75	-1.0
1,214,154	+		HMPREF1058_RS14395	0.77	+0.2
1,214,155	-		HMPREF1058_RS14395	0.78	+1.3
1,214,160	-		HMPREF1058_RS14395	0.78	-0.7
1,214,160	-		HMPREF1058_RS14395	0.78	+0.0
1,214,160	-		HMPREF1058_RS14395	0.78	+1.1
1,214,189	+		HMPREF1058_RS14395	0.83	-0.6
1,214,198	+		HMPREF1058_RS14395	0.84	+0.2
1,214,198	+		HMPREF1058_RS14395	0.84	-0.8
1,214,198	+		HMPREF1058_RS14395	0.84	-0.1
1,214,198	+		HMPREF1058_RS14395	0.84	+0.1
1,214,199	-		HMPREF1058_RS14395	0.84	+1.3
1,214,262	-				+0.3
1,214,262	-				+0.2
1,214,316	+				-0.3
1,214,391	+		HMPREF1058_RS21430	0.63	-3.6
1,214,392	-		HMPREF1058_RS21430	0.64	-0.2
1,214,394	-		HMPREF1058_RS21430	0.66	+0.1
1,214,394	-		HMPREF1058_RS21430	0.66	-1.3
1,214,396	-		HMPREF1058_RS21430	0.67	+0.1
1,214,505	-				-0.1
1,214,514	-				+0.2
1,214,562	-				-0.1
1,214,589	+		HMPREF1058_RS14390	0.11	+0.8
1,214,633	+		HMPREF1058_RS14390	0.21	-0.3
1,214,633	+		HMPREF1058_RS14390	0.21	+0.8
1,214,634	-		HMPREF1058_RS14390	0.22	-0.2
1,214,708	+		HMPREF1058_RS14390	0.38	-0.2
1,214,873	+		HMPREF1058_RS14390	0.76	-0.4
1,214,894	+				+0.8
1,214,894	+		HMPREF1058_RS14390	0.80	+0.3
1,214,895	-		HMPREF1058_RS14390	0.81	-0.2
1,214,895	-		HMPREF1058_RS14390	0.81	+0.4
1,214,895	-		HMPREF1058_RS14390	0.81	+0.5
1,214,901	-		HMPREF1058_RS14390	0.82	-0.2
1,214,903	+		HMPREF1058_RS14390	0.83	-1.5
1,214,908	+		HMPREF1058_RS14390	0.84	+1.2
1,214,908	+		HMPREF1058_RS14390	0.84	-0.3
1,214,908	+		HMPREF1058_RS14390	0.84	-1.2
1,214,908	+		HMPREF1058_RS14390	0.84	+0.3
1,214,908	+		HMPREF1058_RS14390	0.84	+0.3
1,214,909	-		HMPREF1058_RS14390	0.84	+0.2
1,214,990	+				+0.9
1,215,009	+				-1.7
1,215,010	-				-1.6
1,215,047	+				-0.8
1,215,048	-				-1.3
1,215,048	-				-2.0
1,215,048	-				-1.6
1,215,078	+				-1.0
1,215,128	+		HMPREF1058_RS14385	0.14	-1.0
1,215,132	-		HMPREF1058_RS14385	0.15	-0.2
1,215,132	-		HMPREF1058_RS14385	0.15	-1.7
1,215,132	-		HMPREF1058_RS14385	0.15	-0.7
1,215,132	-		HMPREF1058_RS14385	0.15	-2.4
1,215,193	-		HMPREF1058_RS14385	0.21	-2.4
1,215,195	+		HMPREF1058_RS14385	0.21	-3.2
1,215,210	+		HMPREF1058_RS14385	0.23	-2.0
1,215,215	+		HMPREF1058_RS14385	0.23	-2.3
1,215,245	+		HMPREF1058_RS14385	0.26	-0.5
1,215,246	-		HMPREF1058_RS14385	0.26	-1.8
1,215,247	+		HMPREF1058_RS14385	0.26	-1.5
1,215,251	+		HMPREF1058_RS14385	0.27	-2.4
1,215,251	+		HMPREF1058_RS14385	0.27	-1.2
1,215,251	+		HMPREF1058_RS14385	0.27	+1.4
1,215,251	+		HMPREF1058_RS14385	0.27	-0.8
1,215,300	+		HMPREF1058_RS14385	0.32	-2.9
1,215,301	-		HMPREF1058_RS14385	0.32	-1.9
1,215,369	-		HMPREF1058_RS14385	0.39	-3.3
1,215,395	-		HMPREF1058_RS14385	0.41	-0.7
1,215,422	-		HMPREF1058_RS14385	0.44	-1.6
1,215,504	+		HMPREF1058_RS14385	0.52	-1.8
1,215,514	+		HMPREF1058_RS14385	0.53	-2.2
1,215,524	+		HMPREF1058_RS14385	0.54	-2.2
1,215,598	+		HMPREF1058_RS14385	0.62	-2.3
1,215,622	+		HMPREF1058_RS14385	0.64	-1.8
1,215,622	+		HMPREF1058_RS14385	0.64	-1.6
1,215,622	+		HMPREF1058_RS14385	0.64	-1.4
1,215,622	+		HMPREF1058_RS14385	0.64	-3.3
1,215,622	+		HMPREF1058_RS14385	0.64	-1.9
1,215,623	-				+0.8
1,215,623	-		HMPREF1058_RS14385	0.64	-1.3
1,215,628	+		HMPREF1058_RS14385	0.65	-0.8
1,215,628	+				+0.3
1,215,629	-		HMPREF1058_RS14385	0.65	-0.8
1,215,629	-		HMPREF1058_RS14385	0.65	-0.8
1,215,654	+		HMPREF1058_RS14385	0.67	-2.2
1,215,654	+		HMPREF1058_RS14385	0.67	-1.7
1,215,657	+		HMPREF1058_RS14385	0.67	-1.6
1,215,657	+		HMPREF1058_RS14385	0.67	-3.8
1,215,657	+		HMPREF1058_RS14385	0.67	-1.7
1,215,658	-		HMPREF1058_RS14385	0.68	-2.8
1,215,659	+		HMPREF1058_RS14385	0.68	-0.7
1,215,721	-		HMPREF1058_RS14385	0.74	-1.8
1,215,726	-		HMPREF1058_RS14385	0.74	-1.1
1,215,866	+		HMPREF1058_RS14385	0.88	-2.5
1,215,875	-		HMPREF1058_RS14385	0.89	-1.8
1,215,886	+				+0.2
1,215,887	-				-1.1
1,215,943	+				+3.5
1,215,943	+				-1.4
1,215,945	+				-2.9
1,215,946	-				-0.2
1,215,983	+				-2.9
1,216,013	+				-2.5
1,216,013	+				-2.6
1,216,014	-				-3.6
1,216,090	-		HMPREF1058_RS14380	0.11	-1.2
1,216,121	+		HMPREF1058_RS14380	0.14	-0.7
1,216,121	+				+2.3
1,216,369	+		HMPREF1058_RS14380	0.45	-3.0
1,216,453	+		HMPREF1058_RS14380	0.55	-3.1
1,216,566	-		HMPREF1058_RS14380	0.69	-1.0
1,216,800	+				-2.0
1,216,803	-				+0.8
1,216,803	-				-2.5
1,216,804	+				-1.6
1,216,804	+				-0.2
1,216,804	+				+1.5
1,216,805	-				-1.9
1,216,836	+				-3.7
1,216,837	-				-0.3
1,216,843	-				-0.4
1,216,898	+				-0.5
1,216,921	+				-1.0
1,216,922	-				-1.9
1,216,956	-				+0.2