Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07335 and HMPREF1058_RS07330 are separated by 32 nucleotides HMPREF1058_RS07330 and HMPREF1058_RS07325 overlap by 1 nucleotides
HMPREF1058_RS07335: HMPREF1058_RS07335 - TolC family protein, at 257,014 to 258,393
_RS07335
HMPREF1058_RS07330: HMPREF1058_RS07330 - efflux RND transporter permease subunit, at 258,426 to 261,551
_RS07330
HMPREF1058_RS07325: HMPREF1058_RS07325 - efflux RND transporter periplasmic adaptor subunit, at 261,551 to 262,618
_RS07325
Position (kb) 258
259
260
261
262 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 257.452 kb on + strand, within HMPREF1058_RS07335 at 257.453 kb on - strand, within HMPREF1058_RS07335 at 257.462 kb on + strand, within HMPREF1058_RS07335 at 257.581 kb on + strand, within HMPREF1058_RS07335 at 257.587 kb on + strand, within HMPREF1058_RS07335 at 257.605 kb on + strand, within HMPREF1058_RS07335 at 257.737 kb on + strand at 257.783 kb on + strand, within HMPREF1058_RS07335 at 257.829 kb on - strand, within HMPREF1058_RS07335 at 257.840 kb on - strand at 257.963 kb on + strand, within HMPREF1058_RS07335 at 258.024 kb on - strand, within HMPREF1058_RS07335 at 258.039 kb on + strand, within HMPREF1058_RS07335 at 258.154 kb on - strand, within HMPREF1058_RS07335 at 258.232 kb on - strand, within HMPREF1058_RS07335 at 258.409 kb on + strand at 258.457 kb on + strand at 258.459 kb on + strand at 258.459 kb on + strand at 258.459 kb on + strand at 258.459 kb on + strand at 258.460 kb on - strand at 258.460 kb on - strand at 258.460 kb on - strand at 258.460 kb on - strand at 258.462 kb on + strand at 258.464 kb on + strand at 258.515 kb on + strand at 258.515 kb on + strand at 258.516 kb on - strand at 258.516 kb on - strand at 258.734 kb on + strand at 258.902 kb on - strand, within HMPREF1058_RS07330 at 258.979 kb on - strand, within HMPREF1058_RS07330 at 259.607 kb on - strand, within HMPREF1058_RS07330 at 259.607 kb on - strand at 259.650 kb on + strand, within HMPREF1058_RS07330 at 259.651 kb on - strand, within HMPREF1058_RS07330 at 259.659 kb on + strand, within HMPREF1058_RS07330 at 259.659 kb on + strand, within HMPREF1058_RS07330 at 259.660 kb on - strand, within HMPREF1058_RS07330 at 259.740 kb on - strand, within HMPREF1058_RS07330 at 259.769 kb on + strand, within HMPREF1058_RS07330 at 259.841 kb on + strand, within HMPREF1058_RS07330 at 259.841 kb on + strand, within HMPREF1058_RS07330 at 259.842 kb on - strand, within HMPREF1058_RS07330 at 259.844 kb on - strand, within HMPREF1058_RS07330 at 259.921 kb on + strand, within HMPREF1058_RS07330 at 259.921 kb on + strand, within HMPREF1058_RS07330 at 259.922 kb on - strand, within HMPREF1058_RS07330 at 259.969 kb on - strand, within HMPREF1058_RS07330 at 260.024 kb on - strand, within HMPREF1058_RS07330 at 260.038 kb on + strand, within HMPREF1058_RS07330 at 260.039 kb on - strand, within HMPREF1058_RS07330 at 260.063 kb on + strand, within HMPREF1058_RS07330 at 260.103 kb on + strand, within HMPREF1058_RS07330 at 260.131 kb on - strand, within HMPREF1058_RS07330 at 260.151 kb on + strand, within HMPREF1058_RS07330 at 260.200 kb on + strand, within HMPREF1058_RS07330 at 260.201 kb on - strand, within HMPREF1058_RS07330 at 260.201 kb on - strand, within HMPREF1058_RS07330 at 260.201 kb on - strand, within HMPREF1058_RS07330 at 260.350 kb on - strand, within HMPREF1058_RS07330 at 260.509 kb on - strand, within HMPREF1058_RS07330 at 260.582 kb on - strand, within HMPREF1058_RS07330 at 260.649 kb on + strand, within HMPREF1058_RS07330 at 260.701 kb on - strand, within HMPREF1058_RS07330 at 260.726 kb on - strand, within HMPREF1058_RS07330 at 260.767 kb on - strand, within HMPREF1058_RS07330 at 260.838 kb on + strand, within HMPREF1058_RS07330 at 260.893 kb on + strand, within HMPREF1058_RS07330 at 260.906 kb on - strand, within HMPREF1058_RS07330 at 260.994 kb on - strand, within HMPREF1058_RS07330 at 261.019 kb on + strand, within HMPREF1058_RS07330 at 261.037 kb on - strand, within HMPREF1058_RS07330 at 261.124 kb on + strand, within HMPREF1058_RS07330 at 261.125 kb on - strand, within HMPREF1058_RS07330 at 261.125 kb on - strand, within HMPREF1058_RS07330 at 261.139 kb on - strand, within HMPREF1058_RS07330 at 261.207 kb on + strand, within HMPREF1058_RS07330 at 261.207 kb on + strand, within HMPREF1058_RS07330 at 261.273 kb on + strand at 261.552 kb on + strand at 261.553 kb on - strand at 261.555 kb on - strand at 261.599 kb on + strand at 261.729 kb on - strand, within HMPREF1058_RS07325 at 261.762 kb on + strand, within HMPREF1058_RS07325 at 261.891 kb on - strand, within HMPREF1058_RS07325 at 261.909 kb on + strand, within HMPREF1058_RS07325 at 261.909 kb on + strand, within HMPREF1058_RS07325 at 261.910 kb on - strand, within HMPREF1058_RS07325 at 261.911 kb on + strand, within HMPREF1058_RS07325 at 261.911 kb on + strand, within HMPREF1058_RS07325 at 261.912 kb on - strand, within HMPREF1058_RS07325 at 261.912 kb on - strand, within HMPREF1058_RS07325 at 261.912 kb on - strand, within HMPREF1058_RS07325 at 261.948 kb on - strand, within HMPREF1058_RS07325 at 261.996 kb on + strand, within HMPREF1058_RS07325 at 261.996 kb on + strand, within HMPREF1058_RS07325 at 261.997 kb on - strand, within HMPREF1058_RS07325 at 261.997 kb on - strand, within HMPREF1058_RS07325 at 261.997 kb on - strand, within HMPREF1058_RS07325 at 262.021 kb on + strand, within HMPREF1058_RS07325 at 262.183 kb on + strand, within HMPREF1058_RS07325 at 262.464 kb on - strand, within HMPREF1058_RS07325
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 257,452 + HMPREF1058_RS07335 0.32 -2.0 257,453 - HMPREF1058_RS07335 0.32 -1.1 257,462 + HMPREF1058_RS07335 0.32 -1.2 257,581 + HMPREF1058_RS07335 0.41 -0.4 257,587 + HMPREF1058_RS07335 0.42 -2.7 257,605 + HMPREF1058_RS07335 0.43 -3.7 257,737 + +0.8 257,783 + HMPREF1058_RS07335 0.56 -0.4 257,829 - HMPREF1058_RS07335 0.59 -2.2 257,840 - +1.0 257,963 + HMPREF1058_RS07335 0.69 -0.1 258,024 - HMPREF1058_RS07335 0.73 -2.2 258,039 + HMPREF1058_RS07335 0.74 -0.2 258,154 - HMPREF1058_RS07335 0.83 -0.6 258,232 - HMPREF1058_RS07335 0.88 +0.4 258,409 + -0.8 258,457 + -0.8 258,459 + -2.0 258,459 + -1.0 258,459 + -0.4 258,459 + -2.9 258,460 - -0.1 258,460 - +0.1 258,460 - +1.0 258,460 - -1.2 258,462 + -1.8 258,464 + +0.2 258,515 + -1.4 258,515 + -1.3 258,516 - -1.1 258,516 - -1.9 258,734 + -2.4 258,902 - HMPREF1058_RS07330 0.15 -2.8 258,979 - HMPREF1058_RS07330 0.18 -1.7 259,607 - HMPREF1058_RS07330 0.38 -1.3 259,607 - +0.4 259,650 + HMPREF1058_RS07330 0.39 -1.9 259,651 - HMPREF1058_RS07330 0.39 -1.9 259,659 + HMPREF1058_RS07330 0.39 +0.2 259,659 + HMPREF1058_RS07330 0.39 -2.8 259,660 - HMPREF1058_RS07330 0.39 -2.2 259,740 - HMPREF1058_RS07330 0.42 -0.6 259,769 + HMPREF1058_RS07330 0.43 -1.9 259,841 + HMPREF1058_RS07330 0.45 -1.6 259,841 + HMPREF1058_RS07330 0.45 -2.7 259,842 - HMPREF1058_RS07330 0.45 -1.4 259,844 - HMPREF1058_RS07330 0.45 -2.4 259,921 + HMPREF1058_RS07330 0.48 -1.3 259,921 + HMPREF1058_RS07330 0.48 -0.3 259,922 - HMPREF1058_RS07330 0.48 +1.8 259,969 - HMPREF1058_RS07330 0.49 -1.4 260,024 - HMPREF1058_RS07330 0.51 -1.3 260,038 + HMPREF1058_RS07330 0.52 -0.3 260,039 - HMPREF1058_RS07330 0.52 -1.2 260,063 + HMPREF1058_RS07330 0.52 -1.0 260,103 + HMPREF1058_RS07330 0.54 -1.2 260,131 - HMPREF1058_RS07330 0.55 -2.6 260,151 + HMPREF1058_RS07330 0.55 -1.2 260,200 + HMPREF1058_RS07330 0.57 -2.9 260,201 - HMPREF1058_RS07330 0.57 -2.9 260,201 - HMPREF1058_RS07330 0.57 -0.4 260,201 - HMPREF1058_RS07330 0.57 -2.2 260,350 - HMPREF1058_RS07330 0.62 -1.6 260,509 - HMPREF1058_RS07330 0.67 -3.1 260,582 - HMPREF1058_RS07330 0.69 -3.4 260,649 + HMPREF1058_RS07330 0.71 -1.3 260,701 - HMPREF1058_RS07330 0.73 -2.3 260,726 - HMPREF1058_RS07330 0.74 +1.0 260,767 - HMPREF1058_RS07330 0.75 -1.4 260,838 + HMPREF1058_RS07330 0.77 +0.8 260,893 + HMPREF1058_RS07330 0.79 -2.9 260,906 - HMPREF1058_RS07330 0.79 -3.6 260,994 - HMPREF1058_RS07330 0.82 -1.5 261,019 + HMPREF1058_RS07330 0.83 -1.5 261,037 - HMPREF1058_RS07330 0.84 -1.4 261,124 + HMPREF1058_RS07330 0.86 -1.5 261,125 - HMPREF1058_RS07330 0.86 -0.6 261,125 - HMPREF1058_RS07330 0.86 -2.0 261,139 - HMPREF1058_RS07330 0.87 -2.8 261,207 + HMPREF1058_RS07330 0.89 -1.8 261,207 + HMPREF1058_RS07330 0.89 -2.4 261,273 + -1.8 261,552 + -0.1 261,553 - -1.9 261,555 - -1.6 261,599 + -1.5 261,729 - HMPREF1058_RS07325 0.17 +0.4 261,762 + HMPREF1058_RS07325 0.20 -3.6 261,891 - HMPREF1058_RS07325 0.32 -0.2 261,909 + HMPREF1058_RS07325 0.34 -1.5 261,909 + HMPREF1058_RS07325 0.34 -2.5 261,910 - HMPREF1058_RS07325 0.34 -1.4 261,911 + HMPREF1058_RS07325 0.34 -2.4 261,911 + HMPREF1058_RS07325 0.34 -2.3 261,912 - HMPREF1058_RS07325 0.34 -0.7 261,912 - HMPREF1058_RS07325 0.34 -0.9 261,912 - HMPREF1058_RS07325 0.34 -1.6 261,948 - HMPREF1058_RS07325 0.37 -2.3 261,996 + HMPREF1058_RS07325 0.42 -1.3 261,996 + HMPREF1058_RS07325 0.42 -2.8 261,997 - HMPREF1058_RS07325 0.42 -0.8 261,997 - HMPREF1058_RS07325 0.42 -3.2 261,997 - HMPREF1058_RS07325 0.42 -2.9 262,021 + HMPREF1058_RS07325 0.44 -1.7 262,183 + HMPREF1058_RS07325 0.59 -2.1 262,464 - HMPREF1058_RS07325 0.85 -1.7
Or see this region's nucleotide sequence