Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06425 and HMPREF1058_RS06420 are separated by 154 nucleotides HMPREF1058_RS06420 and HMPREF1058_RS06415 are separated by 39 nucleotides HMPREF1058_RS06415 and HMPREF1058_RS06410 are separated by 83 nucleotides HMPREF1058_RS06410 and HMPREF1058_RS06405 are separated by 131 nucleotides
HMPREF1058_RS06425: HMPREF1058_RS06425 - winged helix-turn-helix domain-containing protein, at 481,709 to 481,912
_RS06425
HMPREF1058_RS06420: HMPREF1058_RS06420 - type II toxin-antitoxin system HicA family toxin, at 482,067 to 482,255
_RS06420
HMPREF1058_RS06415: HMPREF1058_RS06415 - antitoxin HicB, at 482,295 to 482,687
_RS06415
HMPREF1058_RS06410: HMPREF1058_RS06410 - elongation factor 4, at 482,771 to 484,552
_RS06410
HMPREF1058_RS06405: HMPREF1058_RS06405 - Na+/H+ antiporter NhaA, at 484,684 to 486,024
_RS06405
Position (kb) 482
483
484
485 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 481.861 kb on + strand, within HMPREF1058_RS06425 at 481.861 kb on + strand, within HMPREF1058_RS06425 at 481.911 kb on - strand at 481.987 kb on + strand at 481.999 kb on - strand at 482.074 kb on - strand at 482.122 kb on + strand, within HMPREF1058_RS06420 at 482.122 kb on + strand, within HMPREF1058_RS06420 at 482.220 kb on + strand, within HMPREF1058_RS06420 at 482.220 kb on + strand, within HMPREF1058_RS06420 at 482.220 kb on + strand, within HMPREF1058_RS06420 at 482.220 kb on + strand, within HMPREF1058_RS06420 at 482.221 kb on - strand, within HMPREF1058_RS06420 at 482.221 kb on - strand, within HMPREF1058_RS06420 at 482.519 kb on + strand, within HMPREF1058_RS06415 at 482.674 kb on + strand at 482.755 kb on + strand at 482.799 kb on + strand at 482.806 kb on + strand at 482.806 kb on + strand at 482.806 kb on + strand at 482.806 kb on + strand at 482.808 kb on + strand at 482.808 kb on + strand at 482.918 kb on - strand at 482.918 kb on - strand at 482.973 kb on - strand, within HMPREF1058_RS06410 at 483.232 kb on + strand, within HMPREF1058_RS06410 at 483.455 kb on + strand, within HMPREF1058_RS06410 at 483.532 kb on + strand, within HMPREF1058_RS06410 at 483.664 kb on + strand, within HMPREF1058_RS06410 at 483.841 kb on + strand, within HMPREF1058_RS06410 at 484.157 kb on + strand, within HMPREF1058_RS06410 at 484.172 kb on + strand, within HMPREF1058_RS06410 at 484.294 kb on + strand, within HMPREF1058_RS06410 at 484.372 kb on + strand, within HMPREF1058_RS06410 at 484.477 kb on + strand at 484.562 kb on - strand at 484.738 kb on + strand at 484.743 kb on + strand at 484.744 kb on - strand at 484.744 kb on - strand at 484.746 kb on + strand at 484.816 kb on - strand at 484.820 kb on - strand, within HMPREF1058_RS06405 at 484.820 kb on - strand, within HMPREF1058_RS06405 at 484.820 kb on - strand, within HMPREF1058_RS06405 at 484.961 kb on + strand, within HMPREF1058_RS06405 at 485.059 kb on + strand, within HMPREF1058_RS06405 at 485.063 kb on - strand, within HMPREF1058_RS06405 at 485.347 kb on - strand at 485.365 kb on - strand, within HMPREF1058_RS06405 at 485.450 kb on - strand, within HMPREF1058_RS06405 at 485.460 kb on + strand, within HMPREF1058_RS06405 at 485.460 kb on + strand, within HMPREF1058_RS06405 at 485.460 kb on + strand, within HMPREF1058_RS06405 at 485.460 kb on + strand, within HMPREF1058_RS06405 at 485.460 kb on + strand, within HMPREF1058_RS06405 at 485.461 kb on - strand, within HMPREF1058_RS06405 at 485.461 kb on - strand, within HMPREF1058_RS06405 at 485.464 kb on + strand, within HMPREF1058_RS06405 at 485.465 kb on - strand, within HMPREF1058_RS06405 at 485.465 kb on - strand, within HMPREF1058_RS06405
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 481,861 + HMPREF1058_RS06425 0.75 +0.1 481,861 + HMPREF1058_RS06425 0.75 -0.8 481,911 - -0.8 481,987 + -1.9 481,999 - +2.8 482,074 - -0.4 482,122 + HMPREF1058_RS06420 0.29 -0.5 482,122 + HMPREF1058_RS06420 0.29 -1.0 482,220 + HMPREF1058_RS06420 0.81 -0.4 482,220 + HMPREF1058_RS06420 0.81 -0.7 482,220 + HMPREF1058_RS06420 0.81 +0.7 482,220 + HMPREF1058_RS06420 0.81 -0.0 482,221 - HMPREF1058_RS06420 0.81 +1.7 482,221 - HMPREF1058_RS06420 0.81 -0.1 482,519 + HMPREF1058_RS06415 0.57 +1.3 482,674 + +0.4 482,755 + +1.3 482,799 + +0.8 482,806 + +0.4 482,806 + +0.4 482,806 + -0.4 482,806 + +1.4 482,808 + -0.2 482,808 + +1.4 482,918 - -0.2 482,918 - +0.8 482,973 - HMPREF1058_RS06410 0.11 +0.8 483,232 + HMPREF1058_RS06410 0.26 +0.4 483,455 + HMPREF1058_RS06410 0.38 -0.0 483,532 + HMPREF1058_RS06410 0.43 +0.8 483,664 + HMPREF1058_RS06410 0.50 -1.3 483,841 + HMPREF1058_RS06410 0.60 -1.8 484,157 + HMPREF1058_RS06410 0.78 -0.9 484,172 + HMPREF1058_RS06410 0.79 +0.1 484,294 + HMPREF1058_RS06410 0.85 -2.2 484,372 + HMPREF1058_RS06410 0.90 +0.1 484,477 + -1.0 484,562 - +0.1 484,738 + +1.0 484,743 + -0.3 484,744 - -3.4 484,744 - +0.0 484,746 + -2.1 484,816 - -0.4 484,820 - HMPREF1058_RS06405 0.10 +0.4 484,820 - HMPREF1058_RS06405 0.10 +0.8 484,820 - HMPREF1058_RS06405 0.10 -2.1 484,961 + HMPREF1058_RS06405 0.21 -0.2 485,059 + HMPREF1058_RS06405 0.28 +1.6 485,063 - HMPREF1058_RS06405 0.28 -1.7 485,347 - +1.4 485,365 - HMPREF1058_RS06405 0.51 -0.0 485,450 - HMPREF1058_RS06405 0.57 +0.7 485,460 + HMPREF1058_RS06405 0.58 -0.2 485,460 + HMPREF1058_RS06405 0.58 -0.6 485,460 + HMPREF1058_RS06405 0.58 +0.2 485,460 + HMPREF1058_RS06405 0.58 +2.0 485,460 + HMPREF1058_RS06405 0.58 -0.4 485,461 - HMPREF1058_RS06405 0.58 +1.2 485,461 - HMPREF1058_RS06405 0.58 +0.4 485,464 + HMPREF1058_RS06405 0.58 +3.3 485,465 - HMPREF1058_RS06405 0.58 +0.2 485,465 - HMPREF1058_RS06405 0.58 -0.5
Or see this region's nucleotide sequence