Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05805 and HMPREF1058_RS05800 are separated by 410 nucleotides HMPREF1058_RS05800 and HMPREF1058_RS05795 overlap by 54 nucleotides
HMPREF1058_RS05805: HMPREF1058_RS05805 - bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase, at 74,523 to 76,820
_RS05805
HMPREF1058_RS05800: HMPREF1058_RS05800 - DUF4858 domain-containing protein, at 77,231 to 78,001
_RS05800
HMPREF1058_RS05795: HMPREF1058_RS05795 - DMT family protein, at 77,948 to 78,322
_RS05795
Position (kb) 77
78
79 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 76.253 kb on + strand, within HMPREF1058_RS05805 at 76.261 kb on + strand at 76.279 kb on + strand, within HMPREF1058_RS05805 at 76.462 kb on - strand, within HMPREF1058_RS05805 at 76.557 kb on - strand, within HMPREF1058_RS05805 at 76.557 kb on - strand, within HMPREF1058_RS05805 at 76.557 kb on - strand, within HMPREF1058_RS05805 at 76.712 kb on + strand at 76.749 kb on - strand at 76.749 kb on - strand at 76.818 kb on + strand at 76.819 kb on - strand at 76.879 kb on + strand at 76.926 kb on - strand at 76.927 kb on + strand at 76.927 kb on + strand at 76.928 kb on - strand at 76.933 kb on + strand at 76.955 kb on + strand at 76.955 kb on + strand at 76.955 kb on + strand at 76.955 kb on + strand at 76.956 kb on - strand at 76.956 kb on - strand at 76.956 kb on - strand at 76.956 kb on - strand at 76.977 kb on + strand at 77.046 kb on + strand at 77.047 kb on - strand at 77.055 kb on - strand at 77.144 kb on - strand at 77.157 kb on - strand at 77.194 kb on - strand at 77.210 kb on - strand at 77.256 kb on + strand at 77.277 kb on + strand at 77.278 kb on - strand at 77.414 kb on - strand, within HMPREF1058_RS05800 at 77.415 kb on + strand, within HMPREF1058_RS05800 at 77.423 kb on - strand, within HMPREF1058_RS05800 at 77.527 kb on + strand, within HMPREF1058_RS05800 at 77.813 kb on + strand, within HMPREF1058_RS05800 at 78.026 kb on - strand, within HMPREF1058_RS05795 at 78.094 kb on + strand, within HMPREF1058_RS05795 at 78.097 kb on + strand, within HMPREF1058_RS05795 at 78.115 kb on + strand, within HMPREF1058_RS05795 at 78.182 kb on - strand, within HMPREF1058_RS05795 at 78.297 kb on - strand at 78.303 kb on + strand at 78.324 kb on + strand at 78.325 kb on - strand at 78.325 kb on - strand at 78.363 kb on - strand at 78.372 kb on + strand at 78.447 kb on + strand at 78.691 kb on + strand at 78.696 kb on + strand at 78.728 kb on + strand at 78.728 kb on + strand at 78.730 kb on + strand at 78.730 kb on + strand at 78.731 kb on - strand at 78.731 kb on - strand at 78.734 kb on + strand at 78.760 kb on + strand at 78.761 kb on - strand at 78.761 kb on - strand at 78.766 kb on + strand at 78.766 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 76,253 + HMPREF1058_RS05805 0.75 -1.3 76,261 + -0.1 76,279 + HMPREF1058_RS05805 0.76 -1.2 76,462 - HMPREF1058_RS05805 0.84 -3.6 76,557 - HMPREF1058_RS05805 0.89 -2.5 76,557 - HMPREF1058_RS05805 0.89 -1.8 76,557 - HMPREF1058_RS05805 0.89 -2.3 76,712 + -2.6 76,749 - +0.5 76,749 - -2.8 76,818 + -0.6 76,819 - -0.4 76,879 + -0.2 76,926 - -1.0 76,927 + +0.4 76,927 + -1.3 76,928 - -0.4 76,933 + +0.3 76,955 + +0.3 76,955 + -0.6 76,955 + -0.5 76,955 + +0.1 76,956 - +1.8 76,956 - +0.3 76,956 - -0.1 76,956 - -0.3 76,977 + -0.7 77,046 + +0.2 77,047 - -0.7 77,055 - +1.6 77,144 - -0.8 77,157 - -0.1 77,194 - +1.1 77,210 - -0.2 77,256 + +0.1 77,277 + +0.1 77,278 - -1.7 77,414 - HMPREF1058_RS05800 0.24 -0.6 77,415 + HMPREF1058_RS05800 0.24 +0.7 77,423 - HMPREF1058_RS05800 0.25 -0.9 77,527 + HMPREF1058_RS05800 0.38 -2.3 77,813 + HMPREF1058_RS05800 0.75 +0.1 78,026 - HMPREF1058_RS05795 0.21 -2.3 78,094 + HMPREF1058_RS05795 0.39 -1.8 78,097 + HMPREF1058_RS05795 0.40 +0.5 78,115 + HMPREF1058_RS05795 0.45 -0.6 78,182 - HMPREF1058_RS05795 0.62 -0.4 78,297 - +1.4 78,303 + -0.4 78,324 + +0.2 78,325 - +0.5 78,325 - -0.6 78,363 - -0.3 78,372 + -0.5 78,447 + +0.8 78,691 + +0.2 78,696 + +1.2 78,728 + -0.5 78,728 + -0.1 78,730 + +0.6 78,730 + -1.2 78,731 - +3.0 78,731 - +0.3 78,734 + +0.2 78,760 + -0.7 78,761 - -0.2 78,761 - -0.8 78,766 + -1.0 78,766 + -2.8
Or see this region's nucleotide sequence