Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04050 and HMPREF1058_RS04045 are separated by 19 nucleotides HMPREF1058_RS04045 and HMPREF1058_RS04040 are separated by 10 nucleotides HMPREF1058_RS04040 and HMPREF1058_RS04035 are separated by 129 nucleotides
HMPREF1058_RS04050: HMPREF1058_RS04050 - protein BatD, at 126,023 to 127,858
_RS04050
HMPREF1058_RS04045: HMPREF1058_RS04045 - tetratricopeptide repeat protein, at 127,878 to 128,696
_RS04045
HMPREF1058_RS04040: HMPREF1058_RS04040 - phosphatase PAP2 family protein, at 128,707 to 129,414
_RS04040
HMPREF1058_RS04035: HMPREF1058_RS04035 - hypothetical protein, at 129,544 to 129,813
_RS04035
Position (kb) 127
128
129 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 126.946 kb on + strand, within HMPREF1058_RS04050 at 126.963 kb on + strand, within HMPREF1058_RS04050 at 127.082 kb on + strand, within HMPREF1058_RS04050 at 127.229 kb on - strand, within HMPREF1058_RS04050 at 127.232 kb on + strand, within HMPREF1058_RS04050 at 127.232 kb on + strand, within HMPREF1058_RS04050 at 127.233 kb on - strand, within HMPREF1058_RS04050 at 127.234 kb on + strand, within HMPREF1058_RS04050 at 127.235 kb on - strand, within HMPREF1058_RS04050 at 127.257 kb on - strand, within HMPREF1058_RS04050 at 127.418 kb on + strand, within HMPREF1058_RS04050 at 127.419 kb on - strand, within HMPREF1058_RS04050 at 127.419 kb on - strand, within HMPREF1058_RS04050 at 127.433 kb on - strand, within HMPREF1058_RS04050 at 127.598 kb on + strand, within HMPREF1058_RS04050 at 127.599 kb on - strand, within HMPREF1058_RS04050 at 127.676 kb on - strand at 127.792 kb on + strand at 127.847 kb on - strand at 127.849 kb on - strand at 127.929 kb on + strand at 127.929 kb on + strand at 128.070 kb on + strand, within HMPREF1058_RS04045 at 128.071 kb on - strand, within HMPREF1058_RS04045 at 128.078 kb on + strand, within HMPREF1058_RS04045 at 128.078 kb on + strand, within HMPREF1058_RS04045 at 128.133 kb on + strand, within HMPREF1058_RS04045 at 128.172 kb on + strand, within HMPREF1058_RS04045 at 128.172 kb on + strand, within HMPREF1058_RS04045 at 128.257 kb on + strand, within HMPREF1058_RS04045 at 128.337 kb on - strand, within HMPREF1058_RS04045 at 128.345 kb on + strand, within HMPREF1058_RS04045 at 128.354 kb on + strand, within HMPREF1058_RS04045 at 128.365 kb on + strand, within HMPREF1058_RS04045 at 128.446 kb on + strand, within HMPREF1058_RS04045 at 128.467 kb on + strand, within HMPREF1058_RS04045 at 128.498 kb on + strand, within HMPREF1058_RS04045 at 128.514 kb on - strand, within HMPREF1058_RS04045 at 128.517 kb on - strand, within HMPREF1058_RS04045 at 128.518 kb on + strand, within HMPREF1058_RS04045 at 128.519 kb on - strand, within HMPREF1058_RS04045 at 128.573 kb on - strand, within HMPREF1058_RS04045 at 128.573 kb on - strand, within HMPREF1058_RS04045 at 128.713 kb on - strand at 128.714 kb on + strand at 128.715 kb on - strand at 128.722 kb on + strand at 128.723 kb on - strand at 128.723 kb on - strand at 128.723 kb on - strand at 128.723 kb on - strand at 128.726 kb on + strand at 128.809 kb on - strand, within HMPREF1058_RS04040 at 128.836 kb on - strand, within HMPREF1058_RS04040 at 128.843 kb on + strand, within HMPREF1058_RS04040 at 128.846 kb on - strand at 128.848 kb on - strand, within HMPREF1058_RS04040 at 128.919 kb on - strand, within HMPREF1058_RS04040 at 128.988 kb on + strand, within HMPREF1058_RS04040 at 128.988 kb on + strand, within HMPREF1058_RS04040 at 128.992 kb on - strand, within HMPREF1058_RS04040 at 128.995 kb on + strand, within HMPREF1058_RS04040 at 128.995 kb on + strand, within HMPREF1058_RS04040 at 128.997 kb on + strand, within HMPREF1058_RS04040 at 128.998 kb on - strand, within HMPREF1058_RS04040 at 129.073 kb on - strand, within HMPREF1058_RS04040 at 129.167 kb on + strand, within HMPREF1058_RS04040 at 129.206 kb on + strand, within HMPREF1058_RS04040 at 129.206 kb on + strand, within HMPREF1058_RS04040 at 129.207 kb on - strand, within HMPREF1058_RS04040 at 129.221 kb on + strand, within HMPREF1058_RS04040 at 129.247 kb on - strand, within HMPREF1058_RS04040 at 129.298 kb on + strand, within HMPREF1058_RS04040 at 129.330 kb on + strand, within HMPREF1058_RS04040 at 129.345 kb on - strand at 129.362 kb on - strand at 129.373 kb on - strand at 129.399 kb on + strand at 129.433 kb on + strand at 129.443 kb on + strand at 129.444 kb on - strand at 129.555 kb on - strand at 129.555 kb on - strand at 129.555 kb on - strand at 129.631 kb on - strand, within HMPREF1058_RS04035 at 129.648 kb on - strand, within HMPREF1058_RS04035 at 129.648 kb on - strand, within HMPREF1058_RS04035 at 129.652 kb on - strand, within HMPREF1058_RS04035
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 126,946 + HMPREF1058_RS04050 0.50 -1.3 126,963 + HMPREF1058_RS04050 0.51 -1.5 127,082 + HMPREF1058_RS04050 0.58 -2.8 127,229 - HMPREF1058_RS04050 0.66 -1.2 127,232 + HMPREF1058_RS04050 0.66 -0.3 127,232 + HMPREF1058_RS04050 0.66 -1.3 127,233 - HMPREF1058_RS04050 0.66 -0.5 127,234 + HMPREF1058_RS04050 0.66 -1.0 127,235 - HMPREF1058_RS04050 0.66 -0.1 127,257 - HMPREF1058_RS04050 0.67 -1.5 127,418 + HMPREF1058_RS04050 0.76 -0.8 127,419 - HMPREF1058_RS04050 0.76 -2.0 127,419 - HMPREF1058_RS04050 0.76 -0.3 127,433 - HMPREF1058_RS04050 0.77 -0.1 127,598 + HMPREF1058_RS04050 0.86 -1.8 127,599 - HMPREF1058_RS04050 0.86 -0.1 127,676 - -0.7 127,792 + -2.9 127,847 - -0.7 127,849 - -2.2 127,929 + +0.3 127,929 + -0.2 128,070 + HMPREF1058_RS04045 0.23 -2.5 128,071 - HMPREF1058_RS04045 0.24 -2.7 128,078 + HMPREF1058_RS04045 0.24 -2.4 128,078 + HMPREF1058_RS04045 0.24 -1.3 128,133 + HMPREF1058_RS04045 0.31 -0.5 128,172 + HMPREF1058_RS04045 0.36 -0.3 128,172 + HMPREF1058_RS04045 0.36 -0.5 128,257 + HMPREF1058_RS04045 0.46 -0.3 128,337 - HMPREF1058_RS04045 0.56 -0.3 128,345 + HMPREF1058_RS04045 0.57 -1.9 128,354 + HMPREF1058_RS04045 0.58 -2.9 128,365 + HMPREF1058_RS04045 0.59 -0.5 128,446 + HMPREF1058_RS04045 0.69 -1.7 128,467 + HMPREF1058_RS04045 0.72 -2.7 128,498 + HMPREF1058_RS04045 0.76 -2.0 128,514 - HMPREF1058_RS04045 0.78 -3.1 128,517 - HMPREF1058_RS04045 0.78 +0.2 128,518 + HMPREF1058_RS04045 0.78 -1.3 128,519 - HMPREF1058_RS04045 0.78 -2.8 128,573 - HMPREF1058_RS04045 0.85 -0.7 128,573 - HMPREF1058_RS04045 0.85 -2.4 128,713 - -1.1 128,714 + +0.7 128,715 - -1.3 128,722 + +0.5 128,723 - -0.5 128,723 - -1.9 128,723 - -0.5 128,723 - -0.8 128,726 + -1.3 128,809 - HMPREF1058_RS04040 0.14 -0.7 128,836 - HMPREF1058_RS04040 0.18 +0.2 128,843 + HMPREF1058_RS04040 0.19 -0.8 128,846 - +2.5 128,848 - HMPREF1058_RS04040 0.20 -0.7 128,919 - HMPREF1058_RS04040 0.30 +0.4 128,988 + HMPREF1058_RS04040 0.40 -1.3 128,988 + HMPREF1058_RS04040 0.40 -0.4 128,992 - HMPREF1058_RS04040 0.40 +1.0 128,995 + HMPREF1058_RS04040 0.41 +0.1 128,995 + HMPREF1058_RS04040 0.41 -0.3 128,997 + HMPREF1058_RS04040 0.41 +0.9 128,998 - HMPREF1058_RS04040 0.41 +3.9 129,073 - HMPREF1058_RS04040 0.52 +0.5 129,167 + HMPREF1058_RS04040 0.65 +1.9 129,206 + HMPREF1058_RS04040 0.70 +0.0 129,206 + HMPREF1058_RS04040 0.70 -0.5 129,207 - HMPREF1058_RS04040 0.71 -0.0 129,221 + HMPREF1058_RS04040 0.73 -0.3 129,247 - HMPREF1058_RS04040 0.76 +0.2 129,298 + HMPREF1058_RS04040 0.83 +0.6 129,330 + HMPREF1058_RS04040 0.88 -0.3 129,345 - -1.3 129,362 - +0.3 129,373 - -0.2 129,399 + -1.0 129,433 + +1.2 129,443 + +0.9 129,444 - -0.1 129,555 - -1.5 129,555 - +0.5 129,555 - -1.2 129,631 - HMPREF1058_RS04035 0.32 +0.5 129,648 - HMPREF1058_RS04035 0.39 +0.2 129,648 - HMPREF1058_RS04035 0.39 -1.1 129,652 - HMPREF1058_RS04035 0.40 +0.3
Or see this region's nucleotide sequence