Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02715

Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
117,963	-				+4.9
118,081	-				-0.2
118,083	-				+0.1
118,096	+				+0.6
118,209	+				-1.7
118,221	+				-0.6
118,248	-				-0.6
118,398	-		HMPREF1058_RS02720	0.27	-2.7
118,488	+		HMPREF1058_RS02720	0.41	-0.5
118,488	+		HMPREF1058_RS02720	0.41	-0.3
118,489	-		HMPREF1058_RS02720	0.41	-2.0
118,519	-		HMPREF1058_RS02720	0.46	-2.0
118,622	+		HMPREF1058_RS02720	0.63	-2.0
118,622	+		HMPREF1058_RS02720	0.63	-0.7
118,622	+		HMPREF1058_RS02720	0.63	-0.5
118,623	-		HMPREF1058_RS02720	0.63	-0.4
118,624	+		HMPREF1058_RS02720	0.63	+0.4
118,624	+		HMPREF1058_RS02720	0.63	-1.4
118,624	+		HMPREF1058_RS02720	0.63	+1.0
118,625	-		HMPREF1058_RS02720	0.64	-1.3
118,744	-		HMPREF1058_RS02720	0.83	-1.2
118,839	+				+0.1
118,852	+				-1.0
118,852	+				-0.7
118,859	+				-1.1
118,859	+				-2.7
118,888	+				-1.7
119,002	-				+0.1
119,127	-		HMPREF1058_RS02715	0.35	-1.5
119,145	-		HMPREF1058_RS02715	0.38	-2.0
119,146	+		HMPREF1058_RS02715	0.38	-1.2
119,146	+		HMPREF1058_RS02715	0.38	-0.7
119,147	-		HMPREF1058_RS02715	0.38	-1.9
119,147	-		HMPREF1058_RS02715	0.38	-1.3
119,166	-		HMPREF1058_RS02715	0.40	-1.2
119,172	-		HMPREF1058_RS02715	0.41	-2.3
119,191	+		HMPREF1058_RS02715	0.44	-2.2
119,199	+		HMPREF1058_RS02715	0.45	-1.6
119,199	+		HMPREF1058_RS02715	0.45	-3.2
119,201	+		HMPREF1058_RS02715	0.45	-1.7
119,303	+		HMPREF1058_RS02715	0.59	+0.3
119,349	-		HMPREF1058_RS02715	0.65	-2.5
119,350	+		HMPREF1058_RS02715	0.65	-2.6
119,414	+		HMPREF1058_RS02715	0.73	-1.7
119,415	-		HMPREF1058_RS02715	0.73	-2.0
119,419	+		HMPREF1058_RS02715	0.74	-2.6
119,449	+		HMPREF1058_RS02715	0.78	-3.0
119,450	-		HMPREF1058_RS02715	0.78	-3.0
119,544	-				-1.0
119,547	-				-1.0
119,549	+				+0.8
119,561	+				-3.3
119,562	-				-2.8
119,596	+				+1.4
119,620	+				+0.6
119,634	+				+0.6
119,795	-				-0.8
119,796	+				+1.3
119,814	-				+1.4
119,819	-				-1.6
119,819	-				-1.5
119,843	+				-1.7
120,021	+				-2.6
120,022	-				+0.4
120,024	-				-1.8
120,065	+		HMPREF1058_RS02710	0.13	-1.8
120,065	+		HMPREF1058_RS02710	0.13	-2.9
120,093	-		HMPREF1058_RS02710	0.16	-1.5
120,177	+		HMPREF1058_RS02710	0.26	-1.4
120,177	+		HMPREF1058_RS02710	0.26	-3.8
120,178	-		HMPREF1058_RS02710	0.26	+0.4
120,245	+		HMPREF1058_RS02710	0.34	-2.1
120,245	+		HMPREF1058_RS02710	0.34	-1.7
120,268	+		HMPREF1058_RS02710	0.37	-3.5
120,289	+		HMPREF1058_RS02710	0.39	-1.6
120,366	+		HMPREF1058_RS02710	0.48	-2.1
120,368	+				+1.4
120,369	-		HMPREF1058_RS02710	0.49	+0.4
120,379	+		HMPREF1058_RS02710	0.50	-2.9
120,379	+		HMPREF1058_RS02710	0.50	-2.7
120,380	-		HMPREF1058_RS02710	0.50	+0.6
120,380	-		HMPREF1058_RS02710	0.50	+1.5
120,413	+		HMPREF1058_RS02710	0.54	-4.3
120,413	+		HMPREF1058_RS02710	0.54	-4.0
120,417	+		HMPREF1058_RS02710	0.54	-3.9
120,417	+		HMPREF1058_RS02710	0.54	-2.4
120,597	-				+2.4