Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02525

Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
161,201	+		HMPREF1058_RS02535	0.76	-0.8
161,201	+		HMPREF1058_RS02535	0.76	-0.3
161,202	-		HMPREF1058_RS02535	0.76	-3.1
161,202	-		HMPREF1058_RS02535	0.76	-2.9
161,203	+		HMPREF1058_RS02535	0.76	-2.1
161,203	+		HMPREF1058_RS02535	0.76	-2.1
161,204	-		HMPREF1058_RS02535	0.76	-1.3
161,204	-		HMPREF1058_RS02535	0.76	-2.0
161,295	+		HMPREF1058_RS02535	0.84	-0.3
161,295	+		HMPREF1058_RS02535	0.84	-0.9
161,296	-				-0.6
161,362	+		HMPREF1058_RS02535	0.89	-2.6
161,363	-		HMPREF1058_RS02535	0.89	-0.1
161,363	-		HMPREF1058_RS02535	0.89	-1.7
161,363	-		HMPREF1058_RS02535	0.89	-0.9
161,366	+		HMPREF1058_RS02535	0.89	-2.7
161,367	-		HMPREF1058_RS02535	0.89	-2.6
161,369	+		HMPREF1058_RS02535	0.90	-3.3
161,511	+				-0.6
161,571	+				-3.6
161,600	-		HMPREF1058_RS02530	0.14	+0.5
161,608	+		HMPREF1058_RS02530	0.16	-1.8
161,614	+		HMPREF1058_RS02530	0.18	-3.4
161,693	-		HMPREF1058_RS02530	0.38	+0.7
161,784	+		HMPREF1058_RS02530	0.62	-0.5
161,785	-		HMPREF1058_RS02530	0.62	-0.9
161,811	-		HMPREF1058_RS02530	0.69	+0.9
161,811	-		HMPREF1058_RS02530	0.69	+1.0
161,851	+		HMPREF1058_RS02530	0.79	-1.3
161,862	-		HMPREF1058_RS02530	0.82	-0.1
161,866	+		HMPREF1058_RS02530	0.83	-0.1
161,882	-		HMPREF1058_RS02530	0.87	-0.1
161,884	+		HMPREF1058_RS02530	0.88	-1.7
161,893	+				-1.8
161,894	-				+1.3
161,911	+				-2.7
161,940	+				+0.4
161,940	+				-1.2
161,945	+				-0.1
161,946	-				+1.5
161,946	-				-0.2
161,946	-				+0.8
161,951	-				+0.2
162,008	-				-3.8
162,010	+				-1.3
162,259	-		HMPREF1058_RS02525	0.34	-3.9
162,285	+		HMPREF1058_RS02525	0.37	-2.2
162,285	+		HMPREF1058_RS02525	0.37	-0.7
162,287	+		HMPREF1058_RS02525	0.37	-0.1
162,293	-		HMPREF1058_RS02525	0.38	-2.7
162,488	+		HMPREF1058_RS02525	0.60	-0.5
162,490	+		HMPREF1058_RS02525	0.60	-1.8
162,548	+		HMPREF1058_RS02525	0.66	-1.0
162,548	+		HMPREF1058_RS02525	0.66	-2.7
162,577	-		HMPREF1058_RS02525	0.70	-5.3
162,582	+		HMPREF1058_RS02525	0.70	-4.5
162,582	+		HMPREF1058_RS02525	0.70	-1.1
162,637	-		HMPREF1058_RS02525	0.76	-4.6
162,643	-		HMPREF1058_RS02525	0.77	-2.2
162,731	+		HMPREF1058_RS02525	0.87	-2.4
162,731	+		HMPREF1058_RS02525	0.87	-1.9
162,733	+		HMPREF1058_RS02525	0.87	-1.0
162,851	+				-0.2
162,870	+				+2.2
162,870	+				-2.3
162,873	-				-0.3
162,959	-				-1.0
162,959	-				-0.4
162,967	-				-0.1
163,096	+				-2.4
163,097	-				-2.5
163,126	-				-2.3
163,153	+		HMPREF1058_RS02520	0.11	-1.0
163,154	-		HMPREF1058_RS02520	0.11	-2.6
163,182	+		HMPREF1058_RS02520	0.12	-2.1
163,187	-		HMPREF1058_RS02520	0.13	-3.2
163,187	-		HMPREF1058_RS02520	0.13	-4.1
163,188	+		HMPREF1058_RS02520	0.13	-2.9
163,192	+		HMPREF1058_RS02520	0.13	-2.7
163,192	+		HMPREF1058_RS02520	0.13	-2.1
163,193	-		HMPREF1058_RS02520	0.13	-3.2
163,266	+		HMPREF1058_RS02520	0.17	+0.6
163,266	+		HMPREF1058_RS02520	0.17	+0.3
163,334	-		HMPREF1058_RS02520	0.20	-3.4
163,619	+		HMPREF1058_RS02520	0.34	-1.1
163,651	+		HMPREF1058_RS02520	0.36	+0.1
163,656	-		HMPREF1058_RS02520	0.36	-3.8
163,656	-		HMPREF1058_RS02520	0.36	-2.4
163,724	+		HMPREF1058_RS02520	0.40	-1.1
163,725	-		HMPREF1058_RS02520	0.40	-3.1
163,763	+		HMPREF1058_RS02520	0.41	-2.3