Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01705 and HMPREF1058_RS01700 are separated by 145 nucleotides HMPREF1058_RS01700 and HMPREF1058_RS01695 are separated by 21 nucleotides
HMPREF1058_RS01705: HMPREF1058_RS01705 - Na+/H+ antiporter NhaC family protein, at 61,786 to 63,090
_RS01705
HMPREF1058_RS01700: HMPREF1058_RS01700 - altronate dehydratase, at 63,236 to 64,726
_RS01700
HMPREF1058_RS01695: HMPREF1058_RS01695 - LacI family DNA-binding transcriptional regulator, at 64,748 to 65,821
_RS01695
Position (kb) 63
64
65 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 62.766 kb on + strand at 62.975 kb on + strand at 63.016 kb on + strand at 63.017 kb on - strand at 63.073 kb on + strand at 63.140 kb on + strand at 63.141 kb on - strand at 63.149 kb on - strand at 63.149 kb on - strand at 63.151 kb on - strand at 63.238 kb on - strand at 63.277 kb on - strand at 63.326 kb on - strand at 63.326 kb on - strand at 63.327 kb on + strand at 63.328 kb on - strand at 63.328 kb on - strand at 63.328 kb on - strand at 63.332 kb on + strand at 63.332 kb on + strand at 63.670 kb on + strand, within HMPREF1058_RS01700 at 63.732 kb on + strand, within HMPREF1058_RS01700 at 63.733 kb on - strand, within HMPREF1058_RS01700 at 63.758 kb on + strand, within HMPREF1058_RS01700 at 63.758 kb on + strand, within HMPREF1058_RS01700 at 63.884 kb on - strand at 64.000 kb on - strand, within HMPREF1058_RS01700 at 64.067 kb on + strand, within HMPREF1058_RS01700 at 64.368 kb on - strand, within HMPREF1058_RS01700 at 64.447 kb on - strand, within HMPREF1058_RS01700 at 64.548 kb on + strand, within HMPREF1058_RS01700 at 64.549 kb on - strand, within HMPREF1058_RS01700 at 64.675 kb on + strand at 64.686 kb on - strand at 64.713 kb on + strand at 64.730 kb on + strand at 64.812 kb on + strand at 64.812 kb on + strand at 64.813 kb on - strand at 64.952 kb on + strand, within HMPREF1058_RS01695 at 64.953 kb on - strand, within HMPREF1058_RS01695 at 65.001 kb on + strand, within HMPREF1058_RS01695 at 65.001 kb on + strand, within HMPREF1058_RS01695 at 65.002 kb on - strand, within HMPREF1058_RS01695 at 65.047 kb on + strand, within HMPREF1058_RS01695 at 65.129 kb on + strand, within HMPREF1058_RS01695 at 65.353 kb on + strand, within HMPREF1058_RS01695 at 65.354 kb on - strand, within HMPREF1058_RS01695 at 65.357 kb on + strand, within HMPREF1058_RS01695 at 65.357 kb on + strand, within HMPREF1058_RS01695 at 65.357 kb on + strand, within HMPREF1058_RS01695 at 65.358 kb on - strand, within HMPREF1058_RS01695 at 65.359 kb on + strand, within HMPREF1058_RS01695 at 65.361 kb on + strand, within HMPREF1058_RS01695 at 65.361 kb on + strand, within HMPREF1058_RS01695 at 65.488 kb on - strand, within HMPREF1058_RS01695 at 65.505 kb on + strand, within HMPREF1058_RS01695 at 65.506 kb on - strand at 65.655 kb on + strand, within HMPREF1058_RS01695 at 65.656 kb on - strand, within HMPREF1058_RS01695 at 65.660 kb on - strand, within HMPREF1058_RS01695 at 65.660 kb on - strand, within HMPREF1058_RS01695
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 62,766 + +2.6 62,975 + +3.9 63,016 + -0.3 63,017 - +0.6 63,073 + +0.0 63,140 + +0.7 63,141 - -1.0 63,149 - +0.1 63,149 - -1.4 63,151 - -0.9 63,238 - +1.0 63,277 - -3.6 63,326 - +0.6 63,326 - -3.5 63,327 + -3.3 63,328 - -0.9 63,328 - -4.6 63,328 - -0.9 63,332 + -2.9 63,332 + -1.2 63,670 + HMPREF1058_RS01700 0.29 -1.0 63,732 + HMPREF1058_RS01700 0.33 +0.0 63,733 - HMPREF1058_RS01700 0.33 -3.2 63,758 + HMPREF1058_RS01700 0.35 -1.9 63,758 + HMPREF1058_RS01700 0.35 -3.2 63,884 - +0.3 64,000 - HMPREF1058_RS01700 0.51 -1.3 64,067 + HMPREF1058_RS01700 0.56 -1.6 64,368 - HMPREF1058_RS01700 0.76 -1.6 64,447 - HMPREF1058_RS01700 0.81 -4.2 64,548 + HMPREF1058_RS01700 0.88 -2.4 64,549 - HMPREF1058_RS01700 0.88 -3.1 64,675 + -0.2 64,686 - -4.3 64,713 + -1.7 64,730 + -2.1 64,812 + -1.1 64,812 + -1.1 64,813 - -0.6 64,952 + HMPREF1058_RS01695 0.19 -3.1 64,953 - HMPREF1058_RS01695 0.19 +0.6 65,001 + HMPREF1058_RS01695 0.24 +2.6 65,001 + HMPREF1058_RS01695 0.24 +0.3 65,002 - HMPREF1058_RS01695 0.24 +0.3 65,047 + HMPREF1058_RS01695 0.28 -0.5 65,129 + HMPREF1058_RS01695 0.35 -1.1 65,353 + HMPREF1058_RS01695 0.56 -0.6 65,354 - HMPREF1058_RS01695 0.56 -1.5 65,357 + HMPREF1058_RS01695 0.57 +3.2 65,357 + HMPREF1058_RS01695 0.57 +1.6 65,357 + HMPREF1058_RS01695 0.57 -0.4 65,358 - HMPREF1058_RS01695 0.57 +0.8 65,359 + HMPREF1058_RS01695 0.57 -0.7 65,361 + HMPREF1058_RS01695 0.57 +0.0 65,361 + HMPREF1058_RS01695 0.57 -1.2 65,488 - HMPREF1058_RS01695 0.69 +0.3 65,505 + HMPREF1058_RS01695 0.70 +0.3 65,506 - +3.6 65,655 + HMPREF1058_RS01695 0.84 +0.0 65,656 - HMPREF1058_RS01695 0.85 -0.7 65,660 - HMPREF1058_RS01695 0.85 -2.1 65,660 - HMPREF1058_RS01695 0.85 +0.1
Or see this region's nucleotide sequence