Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01695 and HMPREF1058_RS01690 are separated by 243 nucleotides HMPREF1058_RS01690 and HMPREF1058_RS01685 are separated by 109 nucleotides
HMPREF1058_RS01695: HMPREF1058_RS01695 - LacI family DNA-binding transcriptional regulator, at 64,748 to 65,821
_RS01695
HMPREF1058_RS01690: HMPREF1058_RS01690 - sugar kinase, at 66,065 to 67,087
_RS01690
HMPREF1058_RS01685: HMPREF1058_RS01685 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 67,197 to 67,871
_RS01685
Position (kb) 66
67
68 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 65.129 kb on + strand, within HMPREF1058_RS01695 at 65.353 kb on + strand, within HMPREF1058_RS01695 at 65.354 kb on - strand, within HMPREF1058_RS01695 at 65.357 kb on + strand, within HMPREF1058_RS01695 at 65.357 kb on + strand, within HMPREF1058_RS01695 at 65.357 kb on + strand, within HMPREF1058_RS01695 at 65.358 kb on - strand, within HMPREF1058_RS01695 at 65.359 kb on + strand, within HMPREF1058_RS01695 at 65.361 kb on + strand, within HMPREF1058_RS01695 at 65.361 kb on + strand, within HMPREF1058_RS01695 at 65.488 kb on - strand, within HMPREF1058_RS01695 at 65.505 kb on + strand, within HMPREF1058_RS01695 at 65.506 kb on - strand at 65.655 kb on + strand, within HMPREF1058_RS01695 at 65.656 kb on - strand, within HMPREF1058_RS01695 at 65.660 kb on - strand, within HMPREF1058_RS01695 at 65.660 kb on - strand, within HMPREF1058_RS01695 at 65.827 kb on - strand at 65.831 kb on - strand at 65.835 kb on - strand at 65.837 kb on - strand at 65.881 kb on + strand at 65.913 kb on + strand at 65.913 kb on + strand at 65.987 kb on + strand at 66.038 kb on + strand at 66.215 kb on + strand, within HMPREF1058_RS01690 at 66.279 kb on - strand, within HMPREF1058_RS01690 at 66.329 kb on + strand, within HMPREF1058_RS01690 at 66.330 kb on - strand, within HMPREF1058_RS01690 at 66.375 kb on - strand, within HMPREF1058_RS01690 at 66.434 kb on - strand, within HMPREF1058_RS01690 at 66.630 kb on + strand, within HMPREF1058_RS01690 at 66.630 kb on + strand, within HMPREF1058_RS01690 at 66.630 kb on + strand, within HMPREF1058_RS01690 at 66.630 kb on + strand, within HMPREF1058_RS01690 at 66.631 kb on - strand, within HMPREF1058_RS01690 at 66.631 kb on - strand, within HMPREF1058_RS01690 at 66.636 kb on + strand, within HMPREF1058_RS01690 at 66.636 kb on + strand, within HMPREF1058_RS01690 at 66.636 kb on + strand, within HMPREF1058_RS01690 at 66.637 kb on - strand, within HMPREF1058_RS01690 at 66.640 kb on + strand, within HMPREF1058_RS01690 at 66.642 kb on + strand, within HMPREF1058_RS01690 at 66.642 kb on + strand, within HMPREF1058_RS01690 at 66.725 kb on + strand, within HMPREF1058_RS01690 at 66.745 kb on + strand, within HMPREF1058_RS01690 at 66.767 kb on - strand, within HMPREF1058_RS01690 at 66.770 kb on + strand, within HMPREF1058_RS01690 at 66.771 kb on - strand, within HMPREF1058_RS01690 at 66.771 kb on - strand, within HMPREF1058_RS01690 at 66.782 kb on - strand, within HMPREF1058_RS01690 at 66.826 kb on + strand, within HMPREF1058_RS01690 at 66.827 kb on - strand, within HMPREF1058_RS01690 at 67.001 kb on - strand at 67.121 kb on + strand at 67.146 kb on + strand at 67.153 kb on - strand at 67.188 kb on + strand at 67.190 kb on + strand at 67.423 kb on + strand, within HMPREF1058_RS01685 at 67.423 kb on + strand, within HMPREF1058_RS01685 at 67.423 kb on + strand, within HMPREF1058_RS01685 at 67.487 kb on - strand, within HMPREF1058_RS01685 at 67.542 kb on + strand, within HMPREF1058_RS01685 at 67.545 kb on - strand, within HMPREF1058_RS01685 at 67.628 kb on - strand, within HMPREF1058_RS01685 at 67.790 kb on - strand, within HMPREF1058_RS01685 at 67.810 kb on - strand at 67.814 kb on - strand at 67.843 kb on - strand at 67.934 kb on - strand at 67.946 kb on - strand at 68.058 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 65,129 + HMPREF1058_RS01695 0.35 -1.1 65,353 + HMPREF1058_RS01695 0.56 -0.6 65,354 - HMPREF1058_RS01695 0.56 -1.5 65,357 + HMPREF1058_RS01695 0.57 +3.2 65,357 + HMPREF1058_RS01695 0.57 +1.6 65,357 + HMPREF1058_RS01695 0.57 -0.4 65,358 - HMPREF1058_RS01695 0.57 +0.8 65,359 + HMPREF1058_RS01695 0.57 -0.7 65,361 + HMPREF1058_RS01695 0.57 +0.0 65,361 + HMPREF1058_RS01695 0.57 -1.2 65,488 - HMPREF1058_RS01695 0.69 +0.3 65,505 + HMPREF1058_RS01695 0.70 +0.3 65,506 - +3.6 65,655 + HMPREF1058_RS01695 0.84 +0.0 65,656 - HMPREF1058_RS01695 0.85 -0.7 65,660 - HMPREF1058_RS01695 0.85 -2.1 65,660 - HMPREF1058_RS01695 0.85 +0.1 65,827 - +0.8 65,831 - -0.7 65,835 - -0.2 65,837 - +0.5 65,881 + +0.2 65,913 + +5.4 65,913 + -0.6 65,987 + -0.2 66,038 + -0.1 66,215 + HMPREF1058_RS01690 0.15 -2.3 66,279 - HMPREF1058_RS01690 0.21 +0.6 66,329 + HMPREF1058_RS01690 0.26 -0.4 66,330 - HMPREF1058_RS01690 0.26 -0.7 66,375 - HMPREF1058_RS01690 0.30 -4.2 66,434 - HMPREF1058_RS01690 0.36 -3.0 66,630 + HMPREF1058_RS01690 0.55 -0.9 66,630 + HMPREF1058_RS01690 0.55 -1.5 66,630 + HMPREF1058_RS01690 0.55 -0.7 66,630 + HMPREF1058_RS01690 0.55 -2.6 66,631 - HMPREF1058_RS01690 0.55 -2.1 66,631 - HMPREF1058_RS01690 0.55 -0.7 66,636 + HMPREF1058_RS01690 0.56 -1.9 66,636 + HMPREF1058_RS01690 0.56 -1.0 66,636 + HMPREF1058_RS01690 0.56 +0.3 66,637 - HMPREF1058_RS01690 0.56 +0.0 66,640 + HMPREF1058_RS01690 0.56 -0.9 66,642 + HMPREF1058_RS01690 0.56 -1.9 66,642 + HMPREF1058_RS01690 0.56 -2.9 66,725 + HMPREF1058_RS01690 0.65 -3.4 66,745 + HMPREF1058_RS01690 0.66 +0.6 66,767 - HMPREF1058_RS01690 0.69 +1.0 66,770 + HMPREF1058_RS01690 0.69 -1.6 66,771 - HMPREF1058_RS01690 0.69 -2.2 66,771 - HMPREF1058_RS01690 0.69 -1.1 66,782 - HMPREF1058_RS01690 0.70 -1.8 66,826 + HMPREF1058_RS01690 0.74 -2.1 66,827 - HMPREF1058_RS01690 0.74 -2.4 67,001 - -4.4 67,121 + -1.8 67,146 + +0.2 67,153 - -1.9 67,188 + -2.6 67,190 + -2.2 67,423 + HMPREF1058_RS01685 0.33 -1.3 67,423 + HMPREF1058_RS01685 0.33 -3.0 67,423 + HMPREF1058_RS01685 0.33 -1.1 67,487 - HMPREF1058_RS01685 0.43 -1.0 67,542 + HMPREF1058_RS01685 0.51 -3.0 67,545 - HMPREF1058_RS01685 0.52 +0.0 67,628 - HMPREF1058_RS01685 0.64 -3.1 67,790 - HMPREF1058_RS01685 0.88 -1.3 67,810 - -3.2 67,814 - -2.7 67,843 - -2.9 67,934 - +0.3 67,946 - +0.3 68,058 - +0.7
Or see this region's nucleotide sequence