Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS01565

Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS01570 and HMPREF1058_RS01565 are separated by 11 nucleotidesHMPREF1058_RS01565 and HMPREF1058_RS01560 are separated by 2 nucleotides HMPREF1058_RS01570: HMPREF1058_RS01570 - ABC transporter substrate-binding protein, at 89,631 to 90,782 _RS01570 HMPREF1058_RS01565: HMPREF1058_RS01565 - iron ABC transporter permease, at 90,794 to 91,831 _RS01565 HMPREF1058_RS01560: HMPREF1058_RS01560 - ABC transporter ATP-binding protein, at 91,834 to 92,853 _RS01560 Position (kb) 90 91 92Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 90.071 kb on + strand, within HMPREF1058_RS01570at 90.072 kb on - strand, within HMPREF1058_RS01570at 90.076 kb on + strand, within HMPREF1058_RS01570at 90.076 kb on + strand, within HMPREF1058_RS01570at 90.081 kb on - strand, within HMPREF1058_RS01570at 90.111 kb on - strand, within HMPREF1058_RS01570at 90.181 kb on + strand, within HMPREF1058_RS01570at 90.213 kb on - strand, within HMPREF1058_RS01570at 90.282 kb on - strand, within HMPREF1058_RS01570at 90.287 kb on + strand, within HMPREF1058_RS01570at 90.287 kb on + strand, within HMPREF1058_RS01570at 90.308 kb on + strand, within HMPREF1058_RS01570at 90.559 kb on - strand, within HMPREF1058_RS01570at 90.579 kb on - strand, within HMPREF1058_RS01570at 90.624 kb on + strand, within HMPREF1058_RS01570at 90.625 kb on - strand, within HMPREF1058_RS01570at 90.646 kb on - strand, within HMPREF1058_RS01570at 90.650 kb on + strand, within HMPREF1058_RS01570at 90.651 kb on - strand, within HMPREF1058_RS01570at 90.673 kb on - strandat 90.680 kb on + strandat 90.776 kb on + strandat 90.789 kb on - strandat 90.792 kb on - strandat 90.815 kb on + strandat 90.870 kb on + strandat 90.871 kb on - strandat 90.938 kb on - strand, within HMPREF1058_RS01565at 90.938 kb on - strand, within HMPREF1058_RS01565at 90.940 kb on - strand, within HMPREF1058_RS01565at 90.949 kb on + strand, within HMPREF1058_RS01565at 90.950 kb on - strand, within HMPREF1058_RS01565at 90.950 kb on - strand, within HMPREF1058_RS01565at 91.155 kb on + strand, within HMPREF1058_RS01565at 91.180 kb on + strand, within HMPREF1058_RS01565at 91.222 kb on + strand, within HMPREF1058_RS01565at 91.246 kb on - strand, within HMPREF1058_RS01565at 91.259 kb on - strand, within HMPREF1058_RS01565at 91.290 kb on - strand, within HMPREF1058_RS01565at 91.352 kb on + strand, within HMPREF1058_RS01565at 91.352 kb on + strand, within HMPREF1058_RS01565at 91.353 kb on - strand, within HMPREF1058_RS01565at 91.412 kb on - strand, within HMPREF1058_RS01565at 91.412 kb on - strand, within HMPREF1058_RS01565at 91.412 kb on - strand, within HMPREF1058_RS01565at 91.413 kb on + strand, within HMPREF1058_RS01565at 91.414 kb on - strand, within HMPREF1058_RS01565at 91.417 kb on + strand, within HMPREF1058_RS01565at 91.417 kb on + strand, within HMPREF1058_RS01565at 91.418 kb on - strand, within HMPREF1058_RS01565at 91.418 kb on - strand, within HMPREF1058_RS01565at 91.491 kb on - strand, within HMPREF1058_RS01565at 91.491 kb on - strand, within HMPREF1058_RS01565at 91.515 kb on + strand, within HMPREF1058_RS01565at 91.516 kb on - strand, within HMPREF1058_RS01565at 91.516 kb on - strandat 91.560 kb on + strand, within HMPREF1058_RS01565at 91.830 kb on - strandat 91.924 kb on - strandat 91.985 kb on + strand, within HMPREF1058_RS01560at 91.985 kb on + strand, within HMPREF1058_RS01560at 92.164 kb on + strand, within HMPREF1058_RS01560at 92.265 kb on + strand, within HMPREF1058_RS01560at 92.266 kb on - strand, within HMPREF1058_RS01560at 92.450 kb on + strand, within HMPREF1058_RS01560at 92.655 kb on + strand, within HMPREF1058_RS01560at 92.655 kb on + strand, within HMPREF1058_RS01560at 92.660 kb on - strand, within HMPREF1058_RS01560at 92.745 kb on + strand, within HMPREF1058_RS01560at 92.763 kb on + strandat 92.764 kb on - strandat 92.764 kb on - strandat 92.764 kb on - strandat 92.803 kb on - strandat 92.803 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
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90,071 + HMPREF1058_RS01570 0.38 -0.2
90,072 - HMPREF1058_RS01570 0.38 -3.7
90,076 + HMPREF1058_RS01570 0.39 -2.3
90,076 + HMPREF1058_RS01570 0.39 -1.5
90,081 - HMPREF1058_RS01570 0.39 +0.6
90,111 - HMPREF1058_RS01570 0.42 -2.0
90,181 + HMPREF1058_RS01570 0.48 -0.6
90,213 - HMPREF1058_RS01570 0.51 -1.4
90,282 - HMPREF1058_RS01570 0.57 +0.0
90,287 + HMPREF1058_RS01570 0.57 -0.9
90,287 + HMPREF1058_RS01570 0.57 -1.1
90,308 + HMPREF1058_RS01570 0.59 -1.2
90,559 - HMPREF1058_RS01570 0.81 -1.7
90,579 - HMPREF1058_RS01570 0.82 -5.9
90,624 + HMPREF1058_RS01570 0.86 +0.6
90,625 - HMPREF1058_RS01570 0.86 -3.3
90,646 - HMPREF1058_RS01570 0.88 -1.8
90,650 + HMPREF1058_RS01570 0.88 -2.6
90,651 - HMPREF1058_RS01570 0.89 -2.4
90,673 - +0.6
90,680 + -1.7
90,776 + -0.3
90,789 - -0.6
90,792 - +0.6
90,815 + -3.5
90,870 + -2.5
90,871 - -0.4
90,938 - HMPREF1058_RS01565 0.14 -4.4
90,938 - HMPREF1058_RS01565 0.14 +0.8
90,940 - HMPREF1058_RS01565 0.14 +2.6
90,949 + HMPREF1058_RS01565 0.15 -1.6
90,950 - HMPREF1058_RS01565 0.15 -1.3
90,950 - HMPREF1058_RS01565 0.15 -1.2
91,155 + HMPREF1058_RS01565 0.35 -3.6
91,180 + HMPREF1058_RS01565 0.37 -0.5
91,222 + HMPREF1058_RS01565 0.41 -3.0
91,246 - HMPREF1058_RS01565 0.44 -1.7
91,259 - HMPREF1058_RS01565 0.45 -2.1
91,290 - HMPREF1058_RS01565 0.48 -0.4
91,352 + HMPREF1058_RS01565 0.54 -4.0
91,352 + HMPREF1058_RS01565 0.54 -1.2
91,353 - HMPREF1058_RS01565 0.54 -1.1
91,412 - HMPREF1058_RS01565 0.60 -1.5
91,412 - HMPREF1058_RS01565 0.60 -1.1
91,412 - HMPREF1058_RS01565 0.60 -1.6
91,413 + HMPREF1058_RS01565 0.60 -3.3
91,414 - HMPREF1058_RS01565 0.60 -2.5
91,417 + HMPREF1058_RS01565 0.60 -1.5
91,417 + HMPREF1058_RS01565 0.60 -3.0
91,418 - HMPREF1058_RS01565 0.60 -1.6
91,418 - HMPREF1058_RS01565 0.60 -1.8
91,491 - HMPREF1058_RS01565 0.67 -2.0
91,491 - HMPREF1058_RS01565 0.67 +0.0
91,515 + HMPREF1058_RS01565 0.69 -1.2
91,516 - HMPREF1058_RS01565 0.70 -1.6
91,516 - +1.6
91,560 + HMPREF1058_RS01565 0.74 -2.4
91,830 - -1.3
91,924 - +0.6
91,985 + HMPREF1058_RS01560 0.15 -2.7
91,985 + HMPREF1058_RS01560 0.15 -2.2
92,164 + HMPREF1058_RS01560 0.32 -1.9
92,265 + HMPREF1058_RS01560 0.42 -0.2
92,266 - HMPREF1058_RS01560 0.42 -2.5
92,450 + HMPREF1058_RS01560 0.60 -2.8
92,655 + HMPREF1058_RS01560 0.80 -1.2
92,655 + HMPREF1058_RS01560 0.80 -2.0
92,660 - HMPREF1058_RS01560 0.81 -0.9
92,745 + HMPREF1058_RS01560 0.89 -3.7
92,763 + -4.1
92,764 - -1.1
92,764 - -3.3
92,764 - -1.6
92,803 - -1.1
92,803 - -3.0

Or see this region's nucleotide sequence