Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01565 and HMPREF1058_RS01560 are separated by 2 nucleotides HMPREF1058_RS01560 and HMPREF1058_RS01555 are separated by 21 nucleotides
HMPREF1058_RS01565: HMPREF1058_RS01565 - iron ABC transporter permease, at 90,794 to 91,831
_RS01565
HMPREF1058_RS01560: HMPREF1058_RS01560 - ABC transporter ATP-binding protein, at 91,834 to 92,853
_RS01560
HMPREF1058_RS01555: HMPREF1058_RS01555 - cobalt-precorrin-5B (C(1))-methyltransferase, at 92,875 to 94,671
_RS01555
Position (kb) 91
92
93 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 90.870 kb on + strand at 90.871 kb on - strand at 90.938 kb on - strand, within HMPREF1058_RS01565 at 90.938 kb on - strand, within HMPREF1058_RS01565 at 90.940 kb on - strand, within HMPREF1058_RS01565 at 90.949 kb on + strand, within HMPREF1058_RS01565 at 90.950 kb on - strand, within HMPREF1058_RS01565 at 90.950 kb on - strand, within HMPREF1058_RS01565 at 91.155 kb on + strand, within HMPREF1058_RS01565 at 91.180 kb on + strand, within HMPREF1058_RS01565 at 91.222 kb on + strand, within HMPREF1058_RS01565 at 91.246 kb on - strand, within HMPREF1058_RS01565 at 91.259 kb on - strand, within HMPREF1058_RS01565 at 91.290 kb on - strand, within HMPREF1058_RS01565 at 91.352 kb on + strand, within HMPREF1058_RS01565 at 91.352 kb on + strand, within HMPREF1058_RS01565 at 91.353 kb on - strand, within HMPREF1058_RS01565 at 91.412 kb on - strand, within HMPREF1058_RS01565 at 91.412 kb on - strand, within HMPREF1058_RS01565 at 91.412 kb on - strand, within HMPREF1058_RS01565 at 91.413 kb on + strand, within HMPREF1058_RS01565 at 91.414 kb on - strand, within HMPREF1058_RS01565 at 91.417 kb on + strand, within HMPREF1058_RS01565 at 91.417 kb on + strand, within HMPREF1058_RS01565 at 91.418 kb on - strand, within HMPREF1058_RS01565 at 91.418 kb on - strand, within HMPREF1058_RS01565 at 91.491 kb on - strand, within HMPREF1058_RS01565 at 91.491 kb on - strand, within HMPREF1058_RS01565 at 91.515 kb on + strand, within HMPREF1058_RS01565 at 91.516 kb on - strand, within HMPREF1058_RS01565 at 91.516 kb on - strand at 91.560 kb on + strand, within HMPREF1058_RS01565 at 91.830 kb on - strand at 91.924 kb on - strand at 91.985 kb on + strand, within HMPREF1058_RS01560 at 91.985 kb on + strand, within HMPREF1058_RS01560 at 92.164 kb on + strand, within HMPREF1058_RS01560 at 92.265 kb on + strand, within HMPREF1058_RS01560 at 92.266 kb on - strand, within HMPREF1058_RS01560 at 92.450 kb on + strand, within HMPREF1058_RS01560 at 92.655 kb on + strand, within HMPREF1058_RS01560 at 92.655 kb on + strand, within HMPREF1058_RS01560 at 92.660 kb on - strand, within HMPREF1058_RS01560 at 92.745 kb on + strand, within HMPREF1058_RS01560 at 92.763 kb on + strand at 92.764 kb on - strand at 92.764 kb on - strand at 92.764 kb on - strand at 92.803 kb on - strand at 92.803 kb on - strand at 92.836 kb on - strand at 93.104 kb on - strand, within HMPREF1058_RS01555 at 93.184 kb on - strand, within HMPREF1058_RS01555 at 93.350 kb on - strand, within HMPREF1058_RS01555 at 93.516 kb on + strand, within HMPREF1058_RS01555 at 93.559 kb on + strand, within HMPREF1058_RS01555 at 93.676 kb on - strand, within HMPREF1058_RS01555 at 93.829 kb on - strand, within HMPREF1058_RS01555
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 90,870 + -2.5 90,871 - -0.4 90,938 - HMPREF1058_RS01565 0.14 -4.4 90,938 - HMPREF1058_RS01565 0.14 +0.8 90,940 - HMPREF1058_RS01565 0.14 +2.6 90,949 + HMPREF1058_RS01565 0.15 -1.6 90,950 - HMPREF1058_RS01565 0.15 -1.3 90,950 - HMPREF1058_RS01565 0.15 -1.2 91,155 + HMPREF1058_RS01565 0.35 -3.6 91,180 + HMPREF1058_RS01565 0.37 -0.5 91,222 + HMPREF1058_RS01565 0.41 -3.0 91,246 - HMPREF1058_RS01565 0.44 -1.7 91,259 - HMPREF1058_RS01565 0.45 -2.1 91,290 - HMPREF1058_RS01565 0.48 -0.4 91,352 + HMPREF1058_RS01565 0.54 -4.0 91,352 + HMPREF1058_RS01565 0.54 -1.2 91,353 - HMPREF1058_RS01565 0.54 -1.1 91,412 - HMPREF1058_RS01565 0.60 -1.5 91,412 - HMPREF1058_RS01565 0.60 -1.1 91,412 - HMPREF1058_RS01565 0.60 -1.6 91,413 + HMPREF1058_RS01565 0.60 -3.3 91,414 - HMPREF1058_RS01565 0.60 -2.5 91,417 + HMPREF1058_RS01565 0.60 -1.5 91,417 + HMPREF1058_RS01565 0.60 -3.0 91,418 - HMPREF1058_RS01565 0.60 -1.6 91,418 - HMPREF1058_RS01565 0.60 -1.8 91,491 - HMPREF1058_RS01565 0.67 -2.0 91,491 - HMPREF1058_RS01565 0.67 +0.0 91,515 + HMPREF1058_RS01565 0.69 -1.2 91,516 - HMPREF1058_RS01565 0.70 -1.6 91,516 - +1.6 91,560 + HMPREF1058_RS01565 0.74 -2.4 91,830 - -1.3 91,924 - +0.6 91,985 + HMPREF1058_RS01560 0.15 -2.7 91,985 + HMPREF1058_RS01560 0.15 -2.2 92,164 + HMPREF1058_RS01560 0.32 -1.9 92,265 + HMPREF1058_RS01560 0.42 -0.2 92,266 - HMPREF1058_RS01560 0.42 -2.5 92,450 + HMPREF1058_RS01560 0.60 -2.8 92,655 + HMPREF1058_RS01560 0.80 -1.2 92,655 + HMPREF1058_RS01560 0.80 -2.0 92,660 - HMPREF1058_RS01560 0.81 -0.9 92,745 + HMPREF1058_RS01560 0.89 -3.7 92,763 + -4.1 92,764 - -1.1 92,764 - -3.3 92,764 - -1.6 92,803 - -1.1 92,803 - -3.0 92,836 - -1.0 93,104 - HMPREF1058_RS01555 0.13 -2.3 93,184 - HMPREF1058_RS01555 0.17 -1.6 93,350 - HMPREF1058_RS01555 0.26 -1.2 93,516 + HMPREF1058_RS01555 0.36 -1.1 93,559 + HMPREF1058_RS01555 0.38 -3.1 93,676 - HMPREF1058_RS01555 0.45 -1.4 93,829 - HMPREF1058_RS01555 0.53 +0.3
Or see this region's nucleotide sequence