Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01550 and HMPREF1058_RS01545 are separated by 21 nucleotides HMPREF1058_RS01545 and HMPREF1058_RS01540 are separated by 4 nucleotides
HMPREF1058_RS01550: HMPREF1058_RS01550 - precorrin-4 C(11)-methyltransferase, at 94,697 to 96,508
_RS01550
HMPREF1058_RS01545: HMPREF1058_RS01545 - bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase, at 96,530 to 97,711
_RS01545
HMPREF1058_RS01540: HMPREF1058_RS01540 - precorrin-3B C(17)-methyltransferase, at 97,716 to 99,122
_RS01540
Position (kb) 96
97
98 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 95.627 kb on - strand, within HMPREF1058_RS01550 at 95.781 kb on - strand, within HMPREF1058_RS01550 at 95.781 kb on - strand, within HMPREF1058_RS01550 at 95.878 kb on + strand, within HMPREF1058_RS01550 at 95.879 kb on - strand, within HMPREF1058_RS01550 at 95.879 kb on - strand, within HMPREF1058_RS01550 at 95.880 kb on + strand, within HMPREF1058_RS01550 at 95.881 kb on - strand, within HMPREF1058_RS01550 at 95.882 kb on + strand, within HMPREF1058_RS01550 at 95.882 kb on + strand, within HMPREF1058_RS01550 at 95.882 kb on + strand, within HMPREF1058_RS01550 at 95.882 kb on + strand, within HMPREF1058_RS01550 at 95.884 kb on + strand, within HMPREF1058_RS01550 at 95.884 kb on + strand, within HMPREF1058_RS01550 at 95.886 kb on + strand, within HMPREF1058_RS01550 at 95.887 kb on - strand, within HMPREF1058_RS01550 at 95.954 kb on + strand, within HMPREF1058_RS01550 at 95.954 kb on + strand, within HMPREF1058_RS01550 at 95.983 kb on - strand, within HMPREF1058_RS01550 at 96.093 kb on + strand, within HMPREF1058_RS01550 at 96.280 kb on - strand, within HMPREF1058_RS01550 at 96.290 kb on + strand, within HMPREF1058_RS01550 at 96.372 kb on - strand at 96.426 kb on + strand at 96.617 kb on - strand at 96.737 kb on + strand, within HMPREF1058_RS01545 at 96.739 kb on + strand, within HMPREF1058_RS01545 at 96.979 kb on + strand, within HMPREF1058_RS01545 at 97.098 kb on - strand, within HMPREF1058_RS01545 at 97.154 kb on - strand, within HMPREF1058_RS01545 at 97.221 kb on + strand, within HMPREF1058_RS01545 at 97.222 kb on - strand, within HMPREF1058_RS01545 at 97.302 kb on - strand, within HMPREF1058_RS01545 at 97.375 kb on + strand, within HMPREF1058_RS01545 at 97.376 kb on - strand, within HMPREF1058_RS01545 at 97.376 kb on - strand, within HMPREF1058_RS01545 at 97.687 kb on + strand at 97.691 kb on + strand at 97.696 kb on + strand at 97.696 kb on + strand at 97.699 kb on - strand at 97.717 kb on + strand at 97.718 kb on - strand at 97.719 kb on + strand at 97.719 kb on + strand at 97.720 kb on - strand at 97.720 kb on - strand at 97.720 kb on - strand at 97.761 kb on - strand at 97.816 kb on - strand at 97.979 kb on - strand, within HMPREF1058_RS01540 at 97.979 kb on - strand, within HMPREF1058_RS01540 at 97.979 kb on - strand, within HMPREF1058_RS01540 at 97.981 kb on - strand, within HMPREF1058_RS01540 at 98.014 kb on - strand, within HMPREF1058_RS01540 at 98.014 kb on - strand, within HMPREF1058_RS01540 at 98.081 kb on - strand, within HMPREF1058_RS01540 at 98.081 kb on - strand, within HMPREF1058_RS01540 at 98.156 kb on + strand, within HMPREF1058_RS01540 at 98.189 kb on + strand, within HMPREF1058_RS01540 at 98.190 kb on - strand, within HMPREF1058_RS01540 at 98.226 kb on + strand, within HMPREF1058_RS01540 at 98.227 kb on - strand, within HMPREF1058_RS01540 at 98.303 kb on + strand, within HMPREF1058_RS01540 at 98.345 kb on + strand, within HMPREF1058_RS01540 at 98.393 kb on - strand, within HMPREF1058_RS01540 at 98.460 kb on - strand, within HMPREF1058_RS01540
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 95,627 - HMPREF1058_RS01550 0.51 -3.7 95,781 - HMPREF1058_RS01550 0.60 -2.1 95,781 - HMPREF1058_RS01550 0.60 -1.9 95,878 + HMPREF1058_RS01550 0.65 -3.3 95,879 - HMPREF1058_RS01550 0.65 -3.3 95,879 - HMPREF1058_RS01550 0.65 -1.6 95,880 + HMPREF1058_RS01550 0.65 -3.1 95,881 - HMPREF1058_RS01550 0.65 -2.1 95,882 + HMPREF1058_RS01550 0.65 +0.6 95,882 + HMPREF1058_RS01550 0.65 -3.9 95,882 + HMPREF1058_RS01550 0.65 -3.0 95,882 + HMPREF1058_RS01550 0.65 -2.8 95,884 + HMPREF1058_RS01550 0.66 -0.9 95,884 + HMPREF1058_RS01550 0.66 -2.2 95,886 + HMPREF1058_RS01550 0.66 -0.4 95,887 - HMPREF1058_RS01550 0.66 -2.0 95,954 + HMPREF1058_RS01550 0.69 -1.2 95,954 + HMPREF1058_RS01550 0.69 -2.0 95,983 - HMPREF1058_RS01550 0.71 -1.8 96,093 + HMPREF1058_RS01550 0.77 -0.1 96,280 - HMPREF1058_RS01550 0.87 +0.9 96,290 + HMPREF1058_RS01550 0.88 +0.8 96,372 - -3.6 96,426 + -1.7 96,617 - -3.4 96,737 + HMPREF1058_RS01545 0.18 -1.0 96,739 + HMPREF1058_RS01545 0.18 -2.3 96,979 + HMPREF1058_RS01545 0.38 -1.3 97,098 - HMPREF1058_RS01545 0.48 -2.0 97,154 - HMPREF1058_RS01545 0.53 -0.7 97,221 + HMPREF1058_RS01545 0.58 -3.0 97,222 - HMPREF1058_RS01545 0.59 +1.0 97,302 - HMPREF1058_RS01545 0.65 -2.1 97,375 + HMPREF1058_RS01545 0.71 -0.4 97,376 - HMPREF1058_RS01545 0.72 -1.9 97,376 - HMPREF1058_RS01545 0.72 -2.5 97,687 + -1.2 97,691 + -0.6 97,696 + -1.9 97,696 + -2.3 97,699 - +0.9 97,717 + -2.9 97,718 - +0.4 97,719 + -3.1 97,719 + -1.1 97,720 - +1.5 97,720 - +1.0 97,720 - +0.0 97,761 - -0.4 97,816 - -4.0 97,979 - HMPREF1058_RS01540 0.19 -3.5 97,979 - HMPREF1058_RS01540 0.19 -1.5 97,979 - HMPREF1058_RS01540 0.19 -2.1 97,981 - HMPREF1058_RS01540 0.19 -0.2 98,014 - HMPREF1058_RS01540 0.21 -2.5 98,014 - HMPREF1058_RS01540 0.21 -0.9 98,081 - HMPREF1058_RS01540 0.26 -3.8 98,081 - HMPREF1058_RS01540 0.26 -1.9 98,156 + HMPREF1058_RS01540 0.31 -2.8 98,189 + HMPREF1058_RS01540 0.34 +2.6 98,190 - HMPREF1058_RS01540 0.34 -3.7 98,226 + HMPREF1058_RS01540 0.36 -1.8 98,227 - HMPREF1058_RS01540 0.36 -0.2 98,303 + HMPREF1058_RS01540 0.42 -0.7 98,345 + HMPREF1058_RS01540 0.45 -3.3 98,393 - HMPREF1058_RS01540 0.48 -3.6 98,460 - HMPREF1058_RS01540 0.53 -2.9
Or see this region's nucleotide sequence