Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2241

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2240 and EX28DRAFT_2241 are separated by 61 nucleotidesEX28DRAFT_2241 and EX28DRAFT_2242 are separated by 303 nucleotidesEX28DRAFT_2242 and EX28DRAFT_2243 are separated by 105 nucleotides EX28DRAFT_2240: EX28DRAFT_2240 - phosphoglycerate mutase, BPG-dependent, family 1, at 2,264,149 to 2,264,901 _2240 EX28DRAFT_2241: EX28DRAFT_2241 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54), at 2,264,963 to 2,266,015 _2241 EX28DRAFT_2242: EX28DRAFT_2242 - YbgS-like protein, at 2,266,319 to 2,266,699 _2242 EX28DRAFT_2243: EX28DRAFT_2243 - cation diffusion facilitator family transporter, at 2,266,805 to 2,267,743 _2243 Position (kb) 2264 2265 2266 2267Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 2264.039 kb on + strandat 2264.039 kb on + strandat 2264.143 kb on + strandat 2264.160 kb on + strandat 2264.274 kb on + strand, within EX28DRAFT_2240at 2264.275 kb on - strand, within EX28DRAFT_2240at 2264.960 kb on - strandat 2265.007 kb on + strandat 2265.008 kb on - strandat 2265.058 kb on - strandat 2265.091 kb on + strand, within EX28DRAFT_2241at 2265.092 kb on - strand, within EX28DRAFT_2241at 2265.092 kb on - strand, within EX28DRAFT_2241at 2265.092 kb on - strand, within EX28DRAFT_2241at 2265.092 kb on - strand, within EX28DRAFT_2241at 2265.174 kb on - strand, within EX28DRAFT_2241at 2265.295 kb on - strand, within EX28DRAFT_2241at 2265.295 kb on - strand, within EX28DRAFT_2241at 2265.869 kb on - strand, within EX28DRAFT_2241at 2265.883 kb on + strand, within EX28DRAFT_2241at 2265.883 kb on + strand, within EX28DRAFT_2241at 2265.913 kb on + strandat 2266.036 kb on - strandat 2266.041 kb on + strandat 2266.042 kb on - strandat 2266.068 kb on - strandat 2266.474 kb on + strand, within EX28DRAFT_2242at 2266.487 kb on - strand, within EX28DRAFT_2242at 2266.487 kb on - strand, within EX28DRAFT_2242at 2266.519 kb on + strand, within EX28DRAFT_2242at 2266.519 kb on + strand, within EX28DRAFT_2242at 2266.520 kb on - strand, within EX28DRAFT_2242at 2266.585 kb on + strand, within EX28DRAFT_2242at 2266.585 kb on + strand, within EX28DRAFT_2242at 2266.585 kb on + strand, within EX28DRAFT_2242at 2266.585 kb on + strand, within EX28DRAFT_2242at 2266.585 kb on + strand, within EX28DRAFT_2242at 2266.585 kb on + strand, within EX28DRAFT_2242at 2266.606 kb on + strand, within EX28DRAFT_2242at 2266.606 kb on + strand, within EX28DRAFT_2242at 2266.656 kb on + strand, within EX28DRAFT_2242at 2266.656 kb on + strand, within EX28DRAFT_2242at 2266.657 kb on - strand, within EX28DRAFT_2242at 2266.675 kb on + strandat 2266.675 kb on + strandat 2266.759 kb on - strandat 2266.762 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,264,039 + -0.2
2,264,039 + -2.3
2,264,143 + -1.2
2,264,160 + +0.0
2,264,274 + EX28DRAFT_2240 0.17 -4.8
2,264,275 - EX28DRAFT_2240 0.17 -2.0
2,264,960 - -0.1
2,265,007 + -2.3
2,265,008 - -0.9
2,265,058 - -0.7
2,265,091 + EX28DRAFT_2241 0.12 -0.1
2,265,092 - EX28DRAFT_2241 0.12 -1.6
2,265,092 - EX28DRAFT_2241 0.12 -4.6
2,265,092 - EX28DRAFT_2241 0.12 -2.1
2,265,092 - EX28DRAFT_2241 0.12 -1.3
2,265,174 - EX28DRAFT_2241 0.20 -2.6
2,265,295 - EX28DRAFT_2241 0.32 -0.7
2,265,295 - EX28DRAFT_2241 0.32 -0.2
2,265,869 - EX28DRAFT_2241 0.86 -0.5
2,265,883 + EX28DRAFT_2241 0.87 -1.1
2,265,883 + EX28DRAFT_2241 0.87 -0.5
2,265,913 + -2.0
2,266,036 - -0.8
2,266,041 + -1.1
2,266,042 - -0.1
2,266,068 - -0.7
2,266,474 + EX28DRAFT_2242 0.41 -0.2
2,266,487 - EX28DRAFT_2242 0.44 +3.5
2,266,487 - EX28DRAFT_2242 0.44 +0.9
2,266,519 + EX28DRAFT_2242 0.52 +1.0
2,266,519 + EX28DRAFT_2242 0.52 -0.0
2,266,520 - EX28DRAFT_2242 0.53 -0.2
2,266,585 + EX28DRAFT_2242 0.70 +1.0
2,266,585 + EX28DRAFT_2242 0.70 +0.7
2,266,585 + EX28DRAFT_2242 0.70 +0.1
2,266,585 + EX28DRAFT_2242 0.70 -1.1
2,266,585 + EX28DRAFT_2242 0.70 +0.1
2,266,585 + EX28DRAFT_2242 0.70 -0.6
2,266,606 + EX28DRAFT_2242 0.75 -0.4
2,266,606 + EX28DRAFT_2242 0.75 -0.2
2,266,656 + EX28DRAFT_2242 0.88 +0.3
2,266,656 + EX28DRAFT_2242 0.88 +0.4
2,266,657 - EX28DRAFT_2242 0.89 +0.1
2,266,675 + -0.7
2,266,675 + +0.1
2,266,759 - -0.4
2,266,762 - -0.9

Or see this region's nucleotide sequence