Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1814 and EX28DRAFT_1815 are separated by 165 nucleotides EX28DRAFT_1815 and EX28DRAFT_1816 are separated by 149 nucleotides
EX28DRAFT_1814: EX28DRAFT_1814 - lipoprotein releasing system, transmembrane protein, LolC/E family, at 1,829,900 to 1,831,190
_1814
EX28DRAFT_1815: EX28DRAFT_1815 - Predicted membrane protein, at 1,831,356 to 1,832,429
_1815
EX28DRAFT_1816: EX28DRAFT_1816 - transcription-repair coupling factor (mfd), at 1,832,579 to 1,836,025
_1816
Position (kb)
1831
1832
1833 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1831.140 kb on - strand at 1831.175 kb on - strand at 1831.222 kb on + strand at 1831.223 kb on - strand at 1831.286 kb on - strand at 1831.292 kb on + strand at 1831.310 kb on + strand at 1831.311 kb on - strand at 1831.331 kb on + strand at 1831.339 kb on + strand at 1831.345 kb on - strand at 1831.387 kb on + strand at 1831.387 kb on + strand at 1831.388 kb on - strand at 1831.388 kb on - strand at 1831.400 kb on + strand at 1831.400 kb on + strand at 1831.401 kb on - strand at 1831.419 kb on + strand at 1831.420 kb on - strand at 1831.501 kb on - strand, within EX28DRAFT_1815 at 1831.501 kb on - strand, within EX28DRAFT_1815 at 1831.506 kb on - strand, within EX28DRAFT_1815 at 1831.506 kb on - strand, within EX28DRAFT_1815 at 1831.572 kb on + strand, within EX28DRAFT_1815 at 1831.573 kb on - strand, within EX28DRAFT_1815 at 1831.573 kb on - strand, within EX28DRAFT_1815 at 1831.574 kb on + strand, within EX28DRAFT_1815 at 1831.792 kb on - strand, within EX28DRAFT_1815 at 1831.792 kb on - strand, within EX28DRAFT_1815 at 1831.792 kb on - strand, within EX28DRAFT_1815 at 1831.798 kb on - strand, within EX28DRAFT_1815 at 1831.826 kb on + strand, within EX28DRAFT_1815 at 1831.931 kb on - strand, within EX28DRAFT_1815 at 1831.944 kb on + strand, within EX28DRAFT_1815 at 1831.947 kb on + strand, within EX28DRAFT_1815 at 1831.965 kb on + strand, within EX28DRAFT_1815 at 1832.067 kb on - strand, within EX28DRAFT_1815 at 1832.117 kb on - strand, within EX28DRAFT_1815 at 1832.122 kb on - strand, within EX28DRAFT_1815 at 1832.140 kb on - strand, within EX28DRAFT_1815 at 1832.196 kb on + strand, within EX28DRAFT_1815 at 1832.262 kb on + strand, within EX28DRAFT_1815 at 1832.321 kb on + strand, within EX28DRAFT_1815 at 1832.322 kb on - strand at 1832.322 kb on - strand at 1832.351 kb on + strand at 1832.399 kb on + strand at 1832.430 kb on + strand at 1832.430 kb on + strand at 1832.430 kb on + strand at 1832.430 kb on + strand at 1832.431 kb on - strand at 1832.431 kb on - strand at 1832.552 kb on - strand at 1832.574 kb on + strand at 1832.574 kb on + strand at 1832.575 kb on - strand at 1832.575 kb on - strand at 1832.595 kb on + strand at 1832.864 kb on + strand at 1832.865 kb on - strand at 1832.911 kb on + strand at 1832.942 kb on + strand, within EX28DRAFT_1816 at 1832.942 kb on + strand, within EX28DRAFT_1816 at 1833.195 kb on + strand, within EX28DRAFT_1816 at 1833.195 kb on + strand, within EX28DRAFT_1816 at 1833.195 kb on + strand, within EX28DRAFT_1816 at 1833.196 kb on - strand, within EX28DRAFT_1816 at 1833.210 kb on + strand, within EX28DRAFT_1816 at 1833.307 kb on + strand, within EX28DRAFT_1816 at 1833.307 kb on + strand, within EX28DRAFT_1816 at 1833.307 kb on + strand, within EX28DRAFT_1816 at 1833.308 kb on - strand, within EX28DRAFT_1816 at 1833.308 kb on - strand, within EX28DRAFT_1816 at 1833.311 kb on + strand, within EX28DRAFT_1816 at 1833.353 kb on + strand, within EX28DRAFT_1816 at 1833.402 kb on - strand, within EX28DRAFT_1816 at 1833.402 kb on - strand, within EX28DRAFT_1816 at 1833.402 kb on - strand, within EX28DRAFT_1816 at 1833.415 kb on + strand, within EX28DRAFT_1816
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,831,140 - +0.2 1,831,175 - -0.9 1,831,222 + -2.1 1,831,223 - -0.3 1,831,286 - +0.3 1,831,292 + -0.4 1,831,310 + -0.3 1,831,311 - +0.4 1,831,331 + -1.3 1,831,339 + -0.7 1,831,345 - +0.2 1,831,387 + -0.1 1,831,387 + +1.0 1,831,388 - -0.2 1,831,388 - +0.2 1,831,400 + -0.1 1,831,400 + -0.5 1,831,401 - -0.8 1,831,419 + +0.3 1,831,420 - -0.5 1,831,501 - EX28DRAFT_1815 0.14 -0.7 1,831,501 - EX28DRAFT_1815 0.14 -0.2 1,831,506 - EX28DRAFT_1815 0.14 -0.9 1,831,506 - EX28DRAFT_1815 0.14 -1.6 1,831,572 + EX28DRAFT_1815 0.20 -0.1 1,831,573 - EX28DRAFT_1815 0.20 -0.6 1,831,573 - EX28DRAFT_1815 0.20 -0.3 1,831,574 + EX28DRAFT_1815 0.20 +0.6 1,831,792 - EX28DRAFT_1815 0.41 +0.3 1,831,792 - EX28DRAFT_1815 0.41 -0.5 1,831,792 - EX28DRAFT_1815 0.41 +1.0 1,831,798 - EX28DRAFT_1815 0.41 -1.2 1,831,826 + EX28DRAFT_1815 0.44 -1.9 1,831,931 - EX28DRAFT_1815 0.54 -0.1 1,831,944 + EX28DRAFT_1815 0.55 -0.8 1,831,947 + EX28DRAFT_1815 0.55 +0.3 1,831,965 + EX28DRAFT_1815 0.57 -0.0 1,832,067 - EX28DRAFT_1815 0.66 -0.1 1,832,117 - EX28DRAFT_1815 0.71 +0.1 1,832,122 - EX28DRAFT_1815 0.71 -0.3 1,832,140 - EX28DRAFT_1815 0.73 -0.3 1,832,196 + EX28DRAFT_1815 0.78 -0.2 1,832,262 + EX28DRAFT_1815 0.84 +0.4 1,832,321 + EX28DRAFT_1815 0.90 -0.2 1,832,322 - +0.8 1,832,322 - +0.1 1,832,351 + +0.5 1,832,399 + -1.1 1,832,430 + +0.5 1,832,430 + +0.7 1,832,430 + -0.5 1,832,430 + -0.2 1,832,431 - -0.3 1,832,431 - -0.6 1,832,552 - +2.5 1,832,574 + -0.4 1,832,574 + +1.4 1,832,575 - +0.3 1,832,575 - +1.6 1,832,595 + +0.9 1,832,864 + +1.1 1,832,865 - +0.5 1,832,911 + +0.1 1,832,942 + EX28DRAFT_1816 0.11 -0.5 1,832,942 + EX28DRAFT_1816 0.11 +1.6 1,833,195 + EX28DRAFT_1816 0.18 -0.7 1,833,195 + EX28DRAFT_1816 0.18 +1.3 1,833,195 + EX28DRAFT_1816 0.18 +0.3 1,833,196 - EX28DRAFT_1816 0.18 +1.2 1,833,210 + EX28DRAFT_1816 0.18 +0.2 1,833,307 + EX28DRAFT_1816 0.21 +0.5 1,833,307 + EX28DRAFT_1816 0.21 +1.1 1,833,307 + EX28DRAFT_1816 0.21 +0.4 1,833,308 - EX28DRAFT_1816 0.21 +1.5 1,833,308 - EX28DRAFT_1816 0.21 +0.5 1,833,311 + EX28DRAFT_1816 0.21 +2.1 1,833,353 + EX28DRAFT_1816 0.22 +1.1 1,833,402 - EX28DRAFT_1816 0.24 +0.6 1,833,402 - EX28DRAFT_1816 0.24 +0.4 1,833,402 - EX28DRAFT_1816 0.24 +0.2 1,833,415 + EX28DRAFT_1816 0.24 +0.7
Or see this region's nucleotide sequence