Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1768 and EX28DRAFT_1769 are separated by 9 nucleotides EX28DRAFT_1769 and EX28DRAFT_1770 are separated by 169 nucleotides
EX28DRAFT_1768: EX28DRAFT_1768 - L-asparaginase, type I, at 1,784,164 to 1,785,180
_1768
EX28DRAFT_1769: EX28DRAFT_1769 - Amidases related to nicotinamidase, at 1,785,190 to 1,785,831
_1769
EX28DRAFT_1770: EX28DRAFT_1770 - Chitinase, at 1,786,001 to 1,787,257
_1770
Position (kb)
1785
1786 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1784.233 kb on + strand at 1784.233 kb on + strand at 1784.234 kb on - strand at 1784.235 kb on + strand at 1784.389 kb on - strand, within EX28DRAFT_1768 at 1784.573 kb on - strand, within EX28DRAFT_1768 at 1784.811 kb on + strand, within EX28DRAFT_1768 at 1784.811 kb on + strand, within EX28DRAFT_1768 at 1784.811 kb on + strand, within EX28DRAFT_1768 at 1784.811 kb on + strand, within EX28DRAFT_1768 at 1784.811 kb on + strand, within EX28DRAFT_1768 at 1784.815 kb on + strand, within EX28DRAFT_1768 at 1784.845 kb on - strand, within EX28DRAFT_1768 at 1784.898 kb on + strand, within EX28DRAFT_1768 at 1784.898 kb on + strand, within EX28DRAFT_1768 at 1784.982 kb on + strand, within EX28DRAFT_1768 at 1784.983 kb on - strand, within EX28DRAFT_1768 at 1784.983 kb on - strand, within EX28DRAFT_1768 at 1784.983 kb on - strand, within EX28DRAFT_1768 at 1785.178 kb on + strand at 1785.185 kb on + strand at 1785.309 kb on + strand, within EX28DRAFT_1769 at 1785.547 kb on + strand, within EX28DRAFT_1769 at 1785.547 kb on + strand, within EX28DRAFT_1769 at 1785.547 kb on + strand, within EX28DRAFT_1769 at 1785.547 kb on + strand, within EX28DRAFT_1769 at 1785.547 kb on + strand, within EX28DRAFT_1769 at 1785.548 kb on - strand, within EX28DRAFT_1769 at 1785.550 kb on - strand, within EX28DRAFT_1769 at 1785.550 kb on - strand, within EX28DRAFT_1769 at 1785.602 kb on + strand, within EX28DRAFT_1769 at 1785.602 kb on + strand, within EX28DRAFT_1769 at 1785.603 kb on - strand, within EX28DRAFT_1769 at 1785.603 kb on - strand, within EX28DRAFT_1769 at 1785.603 kb on - strand, within EX28DRAFT_1769 at 1785.652 kb on + strand, within EX28DRAFT_1769 at 1785.689 kb on + strand, within EX28DRAFT_1769 at 1785.690 kb on - strand, within EX28DRAFT_1769 at 1785.796 kb on + strand at 1785.838 kb on - strand at 1785.872 kb on + strand at 1785.981 kb on + strand at 1786.000 kb on + strand at 1786.167 kb on - strand, within EX28DRAFT_1770 at 1786.184 kb on + strand, within EX28DRAFT_1770 at 1786.218 kb on + strand, within EX28DRAFT_1770 at 1786.427 kb on + strand, within EX28DRAFT_1770 at 1786.428 kb on - strand, within EX28DRAFT_1770 at 1786.622 kb on - strand, within EX28DRAFT_1770 at 1786.646 kb on + strand, within EX28DRAFT_1770 at 1786.647 kb on - strand, within EX28DRAFT_1770 at 1786.647 kb on - strand, within EX28DRAFT_1770 at 1786.664 kb on + strand, within EX28DRAFT_1770 at 1786.706 kb on + strand, within EX28DRAFT_1770 at 1786.706 kb on + strand, within EX28DRAFT_1770 at 1786.707 kb on - strand, within EX28DRAFT_1770 at 1786.707 kb on - strand, within EX28DRAFT_1770 at 1786.748 kb on + strand, within EX28DRAFT_1770 at 1786.776 kb on - strand, within EX28DRAFT_1770 at 1786.826 kb on + strand, within EX28DRAFT_1770
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,784,233 + +0.4 1,784,233 + -0.1 1,784,234 - -0.1 1,784,235 + -0.5 1,784,389 - EX28DRAFT_1768 0.22 +0.1 1,784,573 - EX28DRAFT_1768 0.40 +0.7 1,784,811 + EX28DRAFT_1768 0.64 -0.1 1,784,811 + EX28DRAFT_1768 0.64 +0.1 1,784,811 + EX28DRAFT_1768 0.64 +0.2 1,784,811 + EX28DRAFT_1768 0.64 +0.3 1,784,811 + EX28DRAFT_1768 0.64 -0.4 1,784,815 + EX28DRAFT_1768 0.64 +0.6 1,784,845 - EX28DRAFT_1768 0.67 +0.7 1,784,898 + EX28DRAFT_1768 0.72 +0.3 1,784,898 + EX28DRAFT_1768 0.72 -0.7 1,784,982 + EX28DRAFT_1768 0.80 +0.5 1,784,983 - EX28DRAFT_1768 0.81 +4.0 1,784,983 - EX28DRAFT_1768 0.81 +0.4 1,784,983 - EX28DRAFT_1768 0.81 +0.2 1,785,178 + -0.1 1,785,185 + +0.1 1,785,309 + EX28DRAFT_1769 0.19 -0.8 1,785,547 + EX28DRAFT_1769 0.56 -0.1 1,785,547 + EX28DRAFT_1769 0.56 -0.1 1,785,547 + EX28DRAFT_1769 0.56 -0.3 1,785,547 + EX28DRAFT_1769 0.56 +2.1 1,785,547 + EX28DRAFT_1769 0.56 -0.7 1,785,548 - EX28DRAFT_1769 0.56 -0.5 1,785,550 - EX28DRAFT_1769 0.56 +0.3 1,785,550 - EX28DRAFT_1769 0.56 +0.1 1,785,602 + EX28DRAFT_1769 0.64 +0.6 1,785,602 + EX28DRAFT_1769 0.64 -0.2 1,785,603 - EX28DRAFT_1769 0.64 -0.0 1,785,603 - EX28DRAFT_1769 0.64 +0.2 1,785,603 - EX28DRAFT_1769 0.64 -0.0 1,785,652 + EX28DRAFT_1769 0.72 +0.3 1,785,689 + EX28DRAFT_1769 0.78 +1.0 1,785,690 - EX28DRAFT_1769 0.78 -0.0 1,785,796 + +0.3 1,785,838 - +0.3 1,785,872 + +0.1 1,785,981 + -0.0 1,786,000 + +0.3 1,786,167 - EX28DRAFT_1770 0.13 +1.2 1,786,184 + EX28DRAFT_1770 0.15 -0.2 1,786,218 + EX28DRAFT_1770 0.17 -0.5 1,786,427 + EX28DRAFT_1770 0.34 -2.6 1,786,428 - EX28DRAFT_1770 0.34 +0.3 1,786,622 - EX28DRAFT_1770 0.49 +0.6 1,786,646 + EX28DRAFT_1770 0.51 +0.1 1,786,647 - EX28DRAFT_1770 0.51 +0.5 1,786,647 - EX28DRAFT_1770 0.51 -0.8 1,786,664 + EX28DRAFT_1770 0.53 -0.5 1,786,706 + EX28DRAFT_1770 0.56 -0.0 1,786,706 + EX28DRAFT_1770 0.56 +0.4 1,786,707 - EX28DRAFT_1770 0.56 +1.0 1,786,707 - EX28DRAFT_1770 0.56 +0.2 1,786,748 + EX28DRAFT_1770 0.59 +0.3 1,786,776 - EX28DRAFT_1770 0.62 +0.7 1,786,826 + EX28DRAFT_1770 0.66 -0.3
Or see this region's nucleotide sequence