Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0445 and EX28DRAFT_0446 are separated by 76 nucleotides EX28DRAFT_0446 and EX28DRAFT_0447 are separated by 35 nucleotides EX28DRAFT_0447 and EX28DRAFT_0448 are separated by 18 nucleotides
EX28DRAFT_0445: EX28DRAFT_0445 - capsular exopolysaccharide family, at 425,592 to 427,772
_0445
EX28DRAFT_0446: EX28DRAFT_0446 - Thiol-disulfide isomerase and thioredoxins, at 427,849 to 428,364
_0446
EX28DRAFT_0447: EX28DRAFT_0447 - Glutamate decarboxylase and related PLP-dependent proteins, at 428,400 to 429,866
_0447
EX28DRAFT_0448: EX28DRAFT_0448 - 2,4-diaminobutyrate 4-transaminases, at 429,885 to 431,258
_0448
Position (kb) 428
429
430 Strain fitness (log2 ratio) -2
-1
0
1
2 at 427.450 kb on + strand, within EX28DRAFT_0445 at 427.450 kb on + strand, within EX28DRAFT_0445 at 427.450 kb on + strand, within EX28DRAFT_0445 at 427.450 kb on + strand, within EX28DRAFT_0445 at 427.451 kb on - strand, within EX28DRAFT_0445 at 427.505 kb on - strand, within EX28DRAFT_0445 at 427.505 kb on - strand, within EX28DRAFT_0445 at 427.722 kb on + strand at 427.722 kb on + strand at 427.723 kb on - strand at 427.725 kb on + strand at 427.726 kb on - strand at 427.739 kb on + strand at 427.760 kb on + strand at 427.760 kb on + strand at 427.771 kb on - strand at 427.792 kb on + strand at 428.016 kb on + strand, within EX28DRAFT_0446 at 428.053 kb on + strand, within EX28DRAFT_0446 at 428.079 kb on - strand, within EX28DRAFT_0446 at 428.139 kb on + strand, within EX28DRAFT_0446 at 428.140 kb on - strand, within EX28DRAFT_0446 at 428.258 kb on + strand, within EX28DRAFT_0446 at 428.302 kb on - strand, within EX28DRAFT_0446 at 428.334 kb on - strand at 428.367 kb on + strand at 428.401 kb on + strand at 428.402 kb on - strand at 428.402 kb on - strand at 428.402 kb on - strand at 428.655 kb on - strand, within EX28DRAFT_0447 at 428.890 kb on + strand, within EX28DRAFT_0447 at 428.891 kb on - strand, within EX28DRAFT_0447 at 429.537 kb on - strand, within EX28DRAFT_0447 at 429.751 kb on + strand at 429.751 kb on + strand at 429.752 kb on - strand at 429.815 kb on - strand at 429.815 kb on - strand at 429.869 kb on + strand at 429.870 kb on - strand at 429.877 kb on - strand at 429.912 kb on + strand at 430.305 kb on - strand, within EX28DRAFT_0448 at 430.389 kb on - strand, within EX28DRAFT_0448 at 430.596 kb on - strand, within EX28DRAFT_0448 at 430.637 kb on - strand, within EX28DRAFT_0448 at 430.639 kb on + strand, within EX28DRAFT_0448 at 430.639 kb on + strand, within EX28DRAFT_0448 at 430.639 kb on + strand, within EX28DRAFT_0448 at 430.691 kb on - strand, within EX28DRAFT_0448 at 430.731 kb on - strand, within EX28DRAFT_0448
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 427,450 + EX28DRAFT_0445 0.85 +0.2 427,450 + EX28DRAFT_0445 0.85 +0.1 427,450 + EX28DRAFT_0445 0.85 -0.0 427,450 + EX28DRAFT_0445 0.85 +0.1 427,451 - EX28DRAFT_0445 0.85 +1.1 427,505 - EX28DRAFT_0445 0.88 +0.0 427,505 - EX28DRAFT_0445 0.88 -0.0 427,722 + +0.4 427,722 + +0.3 427,723 - -0.0 427,725 + +0.1 427,726 - -0.3 427,739 + +0.2 427,760 + +0.1 427,760 + +0.5 427,771 - +0.9 427,792 + -0.7 428,016 + EX28DRAFT_0446 0.32 +0.1 428,053 + EX28DRAFT_0446 0.40 +0.5 428,079 - EX28DRAFT_0446 0.45 +0.1 428,139 + EX28DRAFT_0446 0.56 +2.6 428,140 - EX28DRAFT_0446 0.56 +0.7 428,258 + EX28DRAFT_0446 0.79 +0.1 428,302 - EX28DRAFT_0446 0.88 +0.2 428,334 - -0.9 428,367 + +0.6 428,401 + -0.8 428,402 - +0.2 428,402 - -0.5 428,402 - -2.3 428,655 - EX28DRAFT_0447 0.17 +0.8 428,890 + EX28DRAFT_0447 0.33 -0.4 428,891 - EX28DRAFT_0447 0.33 -0.5 429,537 - EX28DRAFT_0447 0.78 -1.1 429,751 + -0.9 429,751 + -2.1 429,752 - -0.2 429,815 - +0.6 429,815 - -1.6 429,869 + +0.1 429,870 - -0.6 429,877 - -1.2 429,912 + +0.7 430,305 - EX28DRAFT_0448 0.31 -0.8 430,389 - EX28DRAFT_0448 0.37 -0.8 430,596 - EX28DRAFT_0448 0.52 -1.1 430,637 - EX28DRAFT_0448 0.55 -2.3 430,639 + EX28DRAFT_0448 0.55 -0.8 430,639 + EX28DRAFT_0448 0.55 -0.8 430,639 + EX28DRAFT_0448 0.55 -0.6 430,691 - EX28DRAFT_0448 0.59 -1.3 430,731 - EX28DRAFT_0448 0.62 -0.1
Or see this region's nucleotide sequence