Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0082 and EX28DRAFT_0083 overlap by 1 nucleotides EX28DRAFT_0083 and EX28DRAFT_0084 overlap by 4 nucleotides EX28DRAFT_0084 and EX28DRAFT_0085 are separated by 46 nucleotides EX28DRAFT_0085 and EX28DRAFT_0086 are separated by 117 nucleotides
EX28DRAFT_0082: EX28DRAFT_0082 - pyridoxine 5'-phosphate synthase, at 22,836 to 23,567
_0082
EX28DRAFT_0083: EX28DRAFT_0083 - holo-[acyl-carrier-protein] synthase, at 23,567 to 23,947
_0083
EX28DRAFT_0084: EX28DRAFT_0084 - 4Fe-4S dicluster domain, at 23,944 to 24,204
_0084
EX28DRAFT_0085: EX28DRAFT_0085 - transcriptional regulator, RpiR family, at 24,251 to 25,099
_0085
EX28DRAFT_0086: EX28DRAFT_0086 - N-acetylmuramic acid 6-phosphate etherase, at 25,217 to 26,110
_0086
Position (kb) 24
25
26 Strain fitness (log2 ratio) -1
0
1 at 23.376 kb on + strand, within EX28DRAFT_0082 at 23.945 kb on + strand at 23.946 kb on - strand at 23.980 kb on - strand, within EX28DRAFT_0084 at 23.987 kb on - strand, within EX28DRAFT_0084 at 24.106 kb on - strand, within EX28DRAFT_0084 at 24.165 kb on + strand, within EX28DRAFT_0084 at 24.165 kb on + strand, within EX28DRAFT_0084 at 24.193 kb on + strand at 24.244 kb on - strand at 24.245 kb on + strand at 24.245 kb on + strand at 24.246 kb on - strand at 24.412 kb on + strand, within EX28DRAFT_0085 at 24.413 kb on - strand, within EX28DRAFT_0085 at 24.413 kb on - strand, within EX28DRAFT_0085 at 24.414 kb on + strand, within EX28DRAFT_0085 at 24.414 kb on + strand, within EX28DRAFT_0085 at 24.416 kb on + strand, within EX28DRAFT_0085 at 24.416 kb on + strand, within EX28DRAFT_0085 at 24.417 kb on - strand, within EX28DRAFT_0085 at 24.417 kb on - strand, within EX28DRAFT_0085 at 24.538 kb on - strand, within EX28DRAFT_0085 at 24.920 kb on - strand, within EX28DRAFT_0085 at 25.089 kb on - strand at 25.100 kb on - strand at 25.319 kb on - strand, within EX28DRAFT_0086 at 25.416 kb on - strand, within EX28DRAFT_0086 at 25.416 kb on - strand, within EX28DRAFT_0086 at 25.416 kb on - strand, within EX28DRAFT_0086 at 25.598 kb on - strand, within EX28DRAFT_0086 at 25.652 kb on + strand, within EX28DRAFT_0086 at 25.653 kb on - strand, within EX28DRAFT_0086 at 25.834 kb on + strand, within EX28DRAFT_0086 at 25.874 kb on + strand, within EX28DRAFT_0086
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 23,376 + EX28DRAFT_0082 0.74 +1.2 23,945 + -0.4 23,946 - +0.0 23,980 - EX28DRAFT_0084 0.14 +0.0 23,987 - EX28DRAFT_0084 0.16 +0.3 24,106 - EX28DRAFT_0084 0.62 +1.0 24,165 + EX28DRAFT_0084 0.85 +0.0 24,165 + EX28DRAFT_0084 0.85 +0.9 24,193 + +1.1 24,244 - -0.1 24,245 + -1.0 24,245 + +0.1 24,246 - +0.4 24,412 + EX28DRAFT_0085 0.19 -0.2 24,413 - EX28DRAFT_0085 0.19 -0.3 24,413 - EX28DRAFT_0085 0.19 -0.4 24,414 + EX28DRAFT_0085 0.19 -0.5 24,414 + EX28DRAFT_0085 0.19 -0.6 24,416 + EX28DRAFT_0085 0.19 -0.1 24,416 + EX28DRAFT_0085 0.19 -1.3 24,417 - EX28DRAFT_0085 0.20 +0.2 24,417 - EX28DRAFT_0085 0.20 -1.3 24,538 - EX28DRAFT_0085 0.34 -0.8 24,920 - EX28DRAFT_0085 0.79 -1.6 25,089 - -0.4 25,100 - -0.6 25,319 - EX28DRAFT_0086 0.11 -0.4 25,416 - EX28DRAFT_0086 0.22 -0.2 25,416 - EX28DRAFT_0086 0.22 -1.6 25,416 - EX28DRAFT_0086 0.22 +0.3 25,598 - EX28DRAFT_0086 0.43 +0.4 25,652 + EX28DRAFT_0086 0.49 +0.1 25,653 - EX28DRAFT_0086 0.49 +0.8 25,834 + EX28DRAFT_0086 0.69 -0.4 25,874 + EX28DRAFT_0086 0.73 +0.1
Or see this region's nucleotide sequence