Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09315 and ABID97_RS09320 are separated by 71 nucleotides ABID97_RS09320 and ABID97_RS09325 are separated by 108 nucleotides
ABID97_RS09315: ABID97_RS09315 - substrate-binding domain-containing protein, at 1,958,389 to 1,959,495
_RS09315
ABID97_RS09320: ABID97_RS09320 - aspartate aminotransferase family protein, at 1,959,567 to 1,960,922
_RS09320
ABID97_RS09325: ABID97_RS09325 - LysR family transcriptional regulator, at 1,961,031 to 1,961,999
_RS09325
Position (kb)
1959
1960
1961 Strain fitness (log2 ratio)
-1
0
1
2 at 1958.939 kb on + strand, within ABID97_RS09315 at 1959.531 kb on - strand at 1959.680 kb on - strand at 1959.680 kb on - strand at 1959.680 kb on - strand at 1959.680 kb on - strand at 1959.776 kb on - strand, within ABID97_RS09320 at 1959.932 kb on - strand, within ABID97_RS09320 at 1959.961 kb on + strand, within ABID97_RS09320 at 1959.961 kb on + strand, within ABID97_RS09320 at 1959.994 kb on + strand, within ABID97_RS09320 at 1959.994 kb on + strand, within ABID97_RS09320 at 1959.994 kb on + strand, within ABID97_RS09320 at 1959.995 kb on - strand, within ABID97_RS09320 at 1959.995 kb on - strand, within ABID97_RS09320 at 1960.454 kb on - strand, within ABID97_RS09320 at 1960.573 kb on + strand, within ABID97_RS09320 at 1960.573 kb on + strand, within ABID97_RS09320 at 1960.657 kb on + strand, within ABID97_RS09320 at 1960.840 kb on + strand at 1960.964 kb on + strand at 1960.964 kb on + strand at 1960.964 kb on + strand at 1960.964 kb on + strand at 1960.965 kb on - strand at 1960.965 kb on - strand at 1961.904 kb on + strand at 1961.905 kb on - strand at 1961.905 kb on - strand at 1961.905 kb on - strand at 1961.905 kb on - strand at 1961.905 kb on - strand at 1961.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 1,958,939 + ABID97_RS09315 0.50 +0.1 1,959,531 - +0.0 1,959,680 - -0.2 1,959,680 - +1.1 1,959,680 - -0.8 1,959,680 - +2.7 1,959,776 - ABID97_RS09320 0.15 +2.2 1,959,932 - ABID97_RS09320 0.27 +0.1 1,959,961 + ABID97_RS09320 0.29 -0.4 1,959,961 + ABID97_RS09320 0.29 -0.9 1,959,994 + ABID97_RS09320 0.31 -0.1 1,959,994 + ABID97_RS09320 0.31 +0.1 1,959,994 + ABID97_RS09320 0.31 -0.0 1,959,995 - ABID97_RS09320 0.32 +0.9 1,959,995 - ABID97_RS09320 0.32 +0.1 1,960,454 - ABID97_RS09320 0.65 -0.0 1,960,573 + ABID97_RS09320 0.74 -0.8 1,960,573 + ABID97_RS09320 0.74 -0.5 1,960,657 + ABID97_RS09320 0.80 -0.0 1,960,840 + +0.3 1,960,964 + +0.4 1,960,964 + -0.1 1,960,964 + -0.3 1,960,964 + -0.0 1,960,965 - +0.2 1,960,965 - -0.3 1,961,904 + +0.1 1,961,905 - +1.2 1,961,905 - -0.7 1,961,905 - -0.5 1,961,905 - -0.9 1,961,905 - -1.2 1,961,905 - -0.5
Or see this region's nucleotide sequence