Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0558

Experiment: KB with Tetracycline 0.0015 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0557 and Psyr_0558 are separated by 65 nucleotidesPsyr_0558 and Psyr_0559 are separated by 255 nucleotides Psyr_0557: Psyr_0557 - phosphoserine phosphatase, at 631,007 to 632,263 _0557 Psyr_0558: Psyr_0558 - conserved hypothetical protein, at 632,329 to 634,113 _0558 Psyr_0559: Psyr_0559 - thiosulfate sulfurtransferase, at 634,369 to 636,201 _0559 Position (kb) 632 633 634 635Strain fitness (log2 ratio) -2 -1 0 1 2at 631.348 kb on + strand, within Psyr_0557at 631.423 kb on + strand, within Psyr_0557at 631.718 kb on - strand, within Psyr_0557at 631.792 kb on - strand, within Psyr_0557at 631.880 kb on + strand, within Psyr_0557at 631.913 kb on + strand, within Psyr_0557at 631.913 kb on + strand, within Psyr_0557at 631.913 kb on + strand, within Psyr_0557at 631.914 kb on - strand, within Psyr_0557at 631.914 kb on - strand, within Psyr_0557at 631.914 kb on - strand, within Psyr_0557at 631.914 kb on - strand, within Psyr_0557at 631.952 kb on + strand, within Psyr_0557at 631.952 kb on + strand, within Psyr_0557at 631.952 kb on + strand, within Psyr_0557at 631.952 kb on + strand, within Psyr_0557at 631.952 kb on + strand, within Psyr_0557at 631.952 kb on + strand, within Psyr_0557at 631.952 kb on + strand, within Psyr_0557at 632.148 kb on + strandat 632.149 kb on - strandat 632.225 kb on + strandat 632.225 kb on + strandat 632.226 kb on - strandat 632.226 kb on - strandat 632.226 kb on - strandat 632.226 kb on - strandat 632.405 kb on + strandat 632.405 kb on + strandat 632.406 kb on - strandat 632.406 kb on - strandat 632.406 kb on - strandat 632.406 kb on - strandat 632.406 kb on - strandat 632.406 kb on - strandat 632.406 kb on - strandat 632.415 kb on - strandat 632.429 kb on + strandat 632.429 kb on + strandat 632.430 kb on - strandat 632.430 kb on - strandat 633.074 kb on + strand, within Psyr_0558at 633.074 kb on + strand, within Psyr_0558at 633.075 kb on - strand, within Psyr_0558at 633.075 kb on - strand, within Psyr_0558at 633.129 kb on + strand, within Psyr_0558at 633.129 kb on + strand, within Psyr_0558at 633.130 kb on - strand, within Psyr_0558at 633.130 kb on - strand, within Psyr_0558at 633.255 kb on - strand, within Psyr_0558at 633.255 kb on - strand, within Psyr_0558at 633.285 kb on + strand, within Psyr_0558at 633.285 kb on + strand, within Psyr_0558at 633.286 kb on - strand, within Psyr_0558at 633.286 kb on - strand, within Psyr_0558at 633.407 kb on - strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.571 kb on + strand, within Psyr_0558at 633.571 kb on + strand, within Psyr_0558at 633.572 kb on - strand, within Psyr_0558at 633.572 kb on - strand, within Psyr_0558at 633.572 kb on - strand, within Psyr_0558at 633.572 kb on - strand, within Psyr_0558at 633.579 kb on - strand, within Psyr_0558at 633.579 kb on - strand, within Psyr_0558at 633.641 kb on + strand, within Psyr_0558at 633.641 kb on + strand, within Psyr_0558at 633.641 kb on + strand, within Psyr_0558at 633.764 kb on + strand, within Psyr_0558at 633.765 kb on - strand, within Psyr_0558at 633.765 kb on - strand, within Psyr_0558at 633.765 kb on - strand, within Psyr_0558at 633.881 kb on + strand, within Psyr_0558at 633.881 kb on + strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 634.088 kb on - strandat 634.202 kb on + strandat 634.203 kb on - strandat 634.203 kb on - strandat 634.203 kb on - strandat 634.223 kb on + strandat 634.223 kb on + strandat 634.223 kb on + strandat 634.224 kb on - strandat 634.224 kb on - strandat 634.228 kb on + strandat 634.228 kb on + strandat 634.229 kb on - strandat 634.264 kb on + strandat 634.264 kb on + strandat 634.264 kb on + strandat 634.264 kb on + strandat 634.265 kb on - strandat 634.265 kb on - strandat 634.265 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Tetracycline 0.0015 ug/ml
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631,348 + Psyr_0557 0.27 -1.4
631,423 + Psyr_0557 0.33 -0.8
631,718 - Psyr_0557 0.57 -0.5
631,792 - Psyr_0557 0.62 -0.2
631,880 + Psyr_0557 0.69 -0.8
631,913 + Psyr_0557 0.72 -1.9
631,913 + Psyr_0557 0.72 -1.2
631,913 + Psyr_0557 0.72 -0.2
631,914 - Psyr_0557 0.72 -1.4
631,914 - Psyr_0557 0.72 -1.0
631,914 - Psyr_0557 0.72 -0.7
631,914 - Psyr_0557 0.72 -0.7
631,952 + Psyr_0557 0.75 +0.1
631,952 + Psyr_0557 0.75 +0.2
631,952 + Psyr_0557 0.75 -0.5
631,952 + Psyr_0557 0.75 -0.9
631,952 + Psyr_0557 0.75 +1.0
631,952 + Psyr_0557 0.75 -1.1
631,952 + Psyr_0557 0.75 +0.5
632,148 + +0.4
632,149 - +1.2
632,225 + -0.4
632,225 + -0.3
632,226 - -0.7
632,226 - +0.8
632,226 - +0.4
632,226 - -0.0
632,405 + +0.2
632,405 + -0.6
632,406 - -0.2
632,406 - +0.6
632,406 - +1.2
632,406 - -0.3
632,406 - -1.0
632,406 - +0.2
632,406 - +0.5
632,415 - -0.7
632,429 + -0.5
632,429 + -0.3
632,430 - +0.4
632,430 - -0.5
633,074 + Psyr_0558 0.42 -1.8
633,074 + Psyr_0558 0.42 +0.5
633,075 - Psyr_0558 0.42 +0.8
633,075 - Psyr_0558 0.42 -0.1
633,129 + Psyr_0558 0.45 +0.2
633,129 + Psyr_0558 0.45 +1.2
633,130 - Psyr_0558 0.45 -0.4
633,130 - Psyr_0558 0.45 -0.8
633,255 - Psyr_0558 0.52 +0.5
633,255 - Psyr_0558 0.52 +0.6
633,285 + Psyr_0558 0.54 +0.4
633,285 + Psyr_0558 0.54 +0.6
633,286 - Psyr_0558 0.54 -0.7
633,286 - Psyr_0558 0.54 -0.9
633,407 - Psyr_0558 0.60 -0.5
633,506 + Psyr_0558 0.66 +0.5
633,506 + Psyr_0558 0.66 +0.9
633,506 + Psyr_0558 0.66 +1.4
633,506 + Psyr_0558 0.66 +0.0
633,506 + Psyr_0558 0.66 -1.3
633,506 + Psyr_0558 0.66 +0.2
633,506 + Psyr_0558 0.66 +0.6
633,506 + Psyr_0558 0.66 -1.5
633,506 + Psyr_0558 0.66 -0.2
633,507 - Psyr_0558 0.66 +0.2
633,507 - Psyr_0558 0.66 -0.4
633,507 - Psyr_0558 0.66 -0.2
633,507 - Psyr_0558 0.66 +1.0
633,507 - Psyr_0558 0.66 -0.1
633,507 - Psyr_0558 0.66 -0.7
633,507 - Psyr_0558 0.66 +0.9
633,507 - Psyr_0558 0.66 +1.3
633,507 - Psyr_0558 0.66 +0.3
633,507 - Psyr_0558 0.66 -0.7
633,507 - Psyr_0558 0.66 -0.5
633,507 - Psyr_0558 0.66 -0.3
633,571 + Psyr_0558 0.70 +1.5
633,571 + Psyr_0558 0.70 -0.6
633,572 - Psyr_0558 0.70 +0.2
633,572 - Psyr_0558 0.70 -0.1
633,572 - Psyr_0558 0.70 +0.2
633,572 - Psyr_0558 0.70 +0.1
633,579 - Psyr_0558 0.70 +1.4
633,579 - Psyr_0558 0.70 +0.4
633,641 + Psyr_0558 0.74 +0.2
633,641 + Psyr_0558 0.74 +0.8
633,641 + Psyr_0558 0.74 -0.8
633,764 + Psyr_0558 0.80 -0.5
633,765 - Psyr_0558 0.80 +0.4
633,765 - Psyr_0558 0.80 -0.1
633,765 - Psyr_0558 0.80 -0.0
633,881 + Psyr_0558 0.87 +1.8
633,881 + Psyr_0558 0.87 +0.4
633,882 - Psyr_0558 0.87 +0.1
634,088 - +1.2
634,202 + +1.5
634,203 - +0.2
634,203 - +0.0
634,203 - +0.1
634,223 + +0.5
634,223 + -0.2
634,223 + -0.3
634,224 - +1.2
634,224 - -0.8
634,228 + -1.5
634,228 + -0.3
634,229 - +0.7
634,264 + -2.5
634,264 + -0.4
634,264 + -1.8
634,264 + -0.3
634,265 - -0.5
634,265 - +1.1
634,265 - +0.9

Or see this region's nucleotide sequence