Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4115

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4114 and EX28DRAFT_4115 are separated by 159 nucleotidesEX28DRAFT_4115 and EX28DRAFT_4116 overlap by 4 nucleotides EX28DRAFT_4114: EX28DRAFT_4114 - aspartate-semialdehyde dehydrogenase, gamma-proteobacterial, at 84,807 to 85,910 _4114 EX28DRAFT_4115: EX28DRAFT_4115 - alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase, at 86,070 to 88,346 _4115 EX28DRAFT_4116: EX28DRAFT_4116 - glycogen debranching enzyme GlgX, at 88,343 to 90,316 _4116 Position (kb) 86 87 88 89Strain fitness (log2 ratio) -1 0 1 2at 85.911 kb on + strandat 85.912 kb on - strandat 85.919 kb on + strandat 85.920 kb on - strandat 85.957 kb on - strandat 85.959 kb on + strandat 85.959 kb on + strandat 85.959 kb on + strandat 85.959 kb on + strandat 85.977 kb on + strandat 85.978 kb on - strandat 85.978 kb on - strandat 85.978 kb on - strandat 86.017 kb on + strandat 86.140 kb on + strandat 86.141 kb on - strandat 86.156 kb on + strandat 86.157 kb on - strandat 86.157 kb on - strandat 86.333 kb on + strand, within EX28DRAFT_4115at 86.333 kb on + strand, within EX28DRAFT_4115at 86.374 kb on + strand, within EX28DRAFT_4115at 86.474 kb on + strand, within EX28DRAFT_4115at 86.475 kb on - strand, within EX28DRAFT_4115at 86.694 kb on - strand, within EX28DRAFT_4115at 86.721 kb on + strand, within EX28DRAFT_4115at 86.722 kb on - strand, within EX28DRAFT_4115at 86.723 kb on + strand, within EX28DRAFT_4115at 86.895 kb on + strand, within EX28DRAFT_4115at 86.903 kb on - strand, within EX28DRAFT_4115at 86.903 kb on - strand, within EX28DRAFT_4115at 86.983 kb on - strand, within EX28DRAFT_4115at 87.118 kb on - strand, within EX28DRAFT_4115at 87.229 kb on - strand, within EX28DRAFT_4115at 87.282 kb on + strand, within EX28DRAFT_4115at 87.288 kb on + strand, within EX28DRAFT_4115at 87.289 kb on - strand, within EX28DRAFT_4115at 87.289 kb on - strand, within EX28DRAFT_4115at 87.312 kb on + strand, within EX28DRAFT_4115at 87.312 kb on + strand, within EX28DRAFT_4115at 87.334 kb on - strand, within EX28DRAFT_4115at 87.594 kb on + strand, within EX28DRAFT_4115at 87.595 kb on - strand, within EX28DRAFT_4115at 87.597 kb on - strand, within EX28DRAFT_4115at 87.597 kb on - strand, within EX28DRAFT_4115at 87.597 kb on - strand, within EX28DRAFT_4115at 87.634 kb on - strand, within EX28DRAFT_4115at 87.634 kb on - strand, within EX28DRAFT_4115at 87.634 kb on - strand, within EX28DRAFT_4115at 87.658 kb on + strand, within EX28DRAFT_4115at 87.659 kb on + strand, within EX28DRAFT_4115at 87.660 kb on - strand, within EX28DRAFT_4115at 87.660 kb on - strand, within EX28DRAFT_4115at 87.663 kb on + strand, within EX28DRAFT_4115at 87.663 kb on + strand, within EX28DRAFT_4115at 87.664 kb on - strand, within EX28DRAFT_4115at 87.664 kb on - strand, within EX28DRAFT_4115at 87.697 kb on - strand, within EX28DRAFT_4115at 87.702 kb on + strand, within EX28DRAFT_4115at 87.703 kb on - strand, within EX28DRAFT_4115at 87.703 kb on - strand, within EX28DRAFT_4115at 87.817 kb on - strand, within EX28DRAFT_4115at 87.820 kb on - strand, within EX28DRAFT_4115at 87.861 kb on - strand, within EX28DRAFT_4115at 87.987 kb on + strand, within EX28DRAFT_4115at 88.153 kb on - strandat 88.215 kb on + strandat 88.321 kb on + strandat 88.321 kb on + strandat 88.363 kb on + strandat 88.364 kb on - strandat 88.441 kb on - strandat 88.507 kb on + strandat 88.564 kb on - strand, within EX28DRAFT_4116at 88.654 kb on + strand, within EX28DRAFT_4116at 88.748 kb on + strand, within EX28DRAFT_4116at 88.798 kb on + strand, within EX28DRAFT_4116at 88.799 kb on - strand, within EX28DRAFT_4116at 88.802 kb on + strand, within EX28DRAFT_4116at 88.803 kb on - strand, within EX28DRAFT_4116at 88.803 kb on - strand, within EX28DRAFT_4116at 88.829 kb on + strand, within EX28DRAFT_4116at 88.830 kb on - strand, within EX28DRAFT_4116at 88.868 kb on + strand, within EX28DRAFT_4116at 88.869 kb on - strand, within EX28DRAFT_4116at 88.869 kb on - strand, within EX28DRAFT_4116at 88.869 kb on - strand, within EX28DRAFT_4116at 88.869 kb on - strand, within EX28DRAFT_4116at 88.901 kb on + strand, within EX28DRAFT_4116at 88.995 kb on - strand, within EX28DRAFT_4116at 88.995 kb on - strand, within EX28DRAFT_4116at 88.995 kb on - strand, within EX28DRAFT_4116at 89.004 kb on - strand, within EX28DRAFT_4116at 89.039 kb on + strand, within EX28DRAFT_4116at 89.197 kb on + strand, within EX28DRAFT_4116at 89.197 kb on + strand, within EX28DRAFT_4116at 89.198 kb on - strand, within EX28DRAFT_4116at 89.198 kb on - strand, within EX28DRAFT_4116at 89.201 kb on + strand, within EX28DRAFT_4116at 89.202 kb on - strand, within EX28DRAFT_4116at 89.228 kb on + strand, within EX28DRAFT_4116at 89.295 kb on - strand, within EX28DRAFT_4116

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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85,911 + -1.2
85,912 - +0.1
85,919 + +1.0
85,920 - +0.0
85,957 - +0.7
85,959 + -0.4
85,959 + -1.1
85,959 + -1.1
85,959 + -1.5
85,977 + -0.6
85,978 - +0.4
85,978 - +0.0
85,978 - -0.4
86,017 + -0.0
86,140 + -0.8
86,141 - +0.6
86,156 + +0.5
86,157 - +0.6
86,157 - -0.3
86,333 + EX28DRAFT_4115 0.12 +1.0
86,333 + EX28DRAFT_4115 0.12 +0.6
86,374 + EX28DRAFT_4115 0.13 +1.3
86,474 + EX28DRAFT_4115 0.18 +1.0
86,475 - EX28DRAFT_4115 0.18 +0.9
86,694 - EX28DRAFT_4115 0.27 -0.4
86,721 + EX28DRAFT_4115 0.29 +0.7
86,722 - EX28DRAFT_4115 0.29 +0.2
86,723 + EX28DRAFT_4115 0.29 +1.2
86,895 + EX28DRAFT_4115 0.36 +0.9
86,903 - EX28DRAFT_4115 0.37 +0.4
86,903 - EX28DRAFT_4115 0.37 +0.7
86,983 - EX28DRAFT_4115 0.40 +0.9
87,118 - EX28DRAFT_4115 0.46 -0.2
87,229 - EX28DRAFT_4115 0.51 +0.7
87,282 + EX28DRAFT_4115 0.53 +0.5
87,288 + EX28DRAFT_4115 0.53 -1.4
87,289 - EX28DRAFT_4115 0.54 +0.4
87,289 - EX28DRAFT_4115 0.54 +0.4
87,312 + EX28DRAFT_4115 0.55 +0.4
87,312 + EX28DRAFT_4115 0.55 +0.6
87,334 - EX28DRAFT_4115 0.56 +0.2
87,594 + EX28DRAFT_4115 0.67 +0.6
87,595 - EX28DRAFT_4115 0.67 +0.9
87,597 - EX28DRAFT_4115 0.67 +1.0
87,597 - EX28DRAFT_4115 0.67 +0.3
87,597 - EX28DRAFT_4115 0.67 -0.4
87,634 - EX28DRAFT_4115 0.69 +0.5
87,634 - EX28DRAFT_4115 0.69 +1.0
87,634 - EX28DRAFT_4115 0.69 +0.2
87,658 + EX28DRAFT_4115 0.70 +0.1
87,659 + EX28DRAFT_4115 0.70 +0.8
87,660 - EX28DRAFT_4115 0.70 +0.8
87,660 - EX28DRAFT_4115 0.70 +0.9
87,663 + EX28DRAFT_4115 0.70 -0.2
87,663 + EX28DRAFT_4115 0.70 -0.6
87,664 - EX28DRAFT_4115 0.70 +0.1
87,664 - EX28DRAFT_4115 0.70 +0.6
87,697 - EX28DRAFT_4115 0.71 +0.4
87,702 + EX28DRAFT_4115 0.72 +0.4
87,703 - EX28DRAFT_4115 0.72 +0.5
87,703 - EX28DRAFT_4115 0.72 +1.1
87,817 - EX28DRAFT_4115 0.77 +0.5
87,820 - EX28DRAFT_4115 0.77 +0.6
87,861 - EX28DRAFT_4115 0.79 -0.3
87,987 + EX28DRAFT_4115 0.84 +1.0
88,153 - +0.6
88,215 + +0.5
88,321 + +0.5
88,321 + +0.2
88,363 + +0.5
88,364 - +1.9
88,441 - +1.0
88,507 + +0.4
88,564 - EX28DRAFT_4116 0.11 +0.0
88,654 + EX28DRAFT_4116 0.16 +0.3
88,748 + EX28DRAFT_4116 0.21 +0.0
88,798 + EX28DRAFT_4116 0.23 +1.7
88,799 - EX28DRAFT_4116 0.23 +0.6
88,802 + EX28DRAFT_4116 0.23 +0.6
88,803 - EX28DRAFT_4116 0.23 +0.6
88,803 - EX28DRAFT_4116 0.23 +0.3
88,829 + EX28DRAFT_4116 0.25 -0.9
88,830 - EX28DRAFT_4116 0.25 +0.2
88,868 + EX28DRAFT_4116 0.27 +0.2
88,869 - EX28DRAFT_4116 0.27 +0.0
88,869 - EX28DRAFT_4116 0.27 +0.4
88,869 - EX28DRAFT_4116 0.27 +0.4
88,869 - EX28DRAFT_4116 0.27 +0.8
88,901 + EX28DRAFT_4116 0.28 -1.3
88,995 - EX28DRAFT_4116 0.33 -0.0
88,995 - EX28DRAFT_4116 0.33 -0.5
88,995 - EX28DRAFT_4116 0.33 +0.3
89,004 - EX28DRAFT_4116 0.33 -0.2
89,039 + EX28DRAFT_4116 0.35 -0.2
89,197 + EX28DRAFT_4116 0.43 -0.4
89,197 + EX28DRAFT_4116 0.43 -0.6
89,198 - EX28DRAFT_4116 0.43 +1.3
89,198 - EX28DRAFT_4116 0.43 +0.3
89,201 + EX28DRAFT_4116 0.43 +0.7
89,202 - EX28DRAFT_4116 0.44 +0.9
89,228 + EX28DRAFT_4116 0.45 +0.1
89,295 - EX28DRAFT_4116 0.48 +0.1

Or see this region's nucleotide sequence