Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3393

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3392 and EX28DRAFT_3393 are separated by 244 nucleotidesEX28DRAFT_3393 and EX28DRAFT_3394 are separated by 79 nucleotides EX28DRAFT_3392: EX28DRAFT_3392 - iron-sulfur cluster repair di-iron protein, at 59,651 to 60,313 _3392 EX28DRAFT_3393: EX28DRAFT_3393 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 60,558 to 62,207 _3393 EX28DRAFT_3394: EX28DRAFT_3394 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 62,287 to 63,252 _3394 Position (kb) 60 61 62 63Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 59.663 kb on + strandat 59.723 kb on - strand, within EX28DRAFT_3392at 59.742 kb on + strand, within EX28DRAFT_3392at 59.743 kb on - strand, within EX28DRAFT_3392at 59.891 kb on + strand, within EX28DRAFT_3392at 59.892 kb on - strand, within EX28DRAFT_3392at 59.927 kb on - strand, within EX28DRAFT_3392at 59.927 kb on - strand, within EX28DRAFT_3392at 59.961 kb on + strand, within EX28DRAFT_3392at 60.062 kb on - strand, within EX28DRAFT_3392at 60.241 kb on - strand, within EX28DRAFT_3392at 60.241 kb on - strand, within EX28DRAFT_3392at 60.314 kb on - strandat 60.335 kb on - strandat 60.374 kb on + strandat 60.375 kb on - strandat 60.375 kb on - strandat 60.375 kb on - strandat 60.451 kb on + strandat 60.451 kb on + strandat 60.452 kb on - strandat 60.452 kb on - strandat 60.452 kb on - strandat 60.484 kb on - strandat 60.484 kb on - strandat 60.516 kb on + strandat 60.518 kb on + strandat 60.519 kb on - strandat 60.519 kb on - strandat 60.541 kb on + strandat 60.541 kb on + strandat 60.542 kb on - strandat 60.542 kb on - strandat 60.542 kb on - strandat 60.542 kb on - strandat 60.543 kb on + strandat 60.543 kb on + strandat 60.544 kb on - strandat 60.544 kb on - strandat 60.569 kb on + strandat 60.570 kb on - strandat 60.570 kb on - strandat 60.571 kb on + strandat 60.875 kb on + strand, within EX28DRAFT_3393at 60.876 kb on - strand, within EX28DRAFT_3393at 60.879 kb on + strand, within EX28DRAFT_3393at 60.879 kb on + strand, within EX28DRAFT_3393at 60.879 kb on + strand, within EX28DRAFT_3393at 60.880 kb on - strand, within EX28DRAFT_3393at 60.880 kb on - strand, within EX28DRAFT_3393at 60.880 kb on - strand, within EX28DRAFT_3393at 60.880 kb on - strand, within EX28DRAFT_3393at 60.880 kb on - strand, within EX28DRAFT_3393at 60.880 kb on - strand, within EX28DRAFT_3393at 60.880 kb on - strand, within EX28DRAFT_3393at 60.882 kb on + strand, within EX28DRAFT_3393at 60.882 kb on + strand, within EX28DRAFT_3393at 60.882 kb on + strand, within EX28DRAFT_3393at 60.882 kb on + strand, within EX28DRAFT_3393at 60.882 kb on + strand, within EX28DRAFT_3393at 60.882 kb on + strand, within EX28DRAFT_3393at 60.883 kb on - strand, within EX28DRAFT_3393at 61.007 kb on + strand, within EX28DRAFT_3393at 61.123 kb on - strand, within EX28DRAFT_3393at 61.178 kb on + strand, within EX28DRAFT_3393at 61.292 kb on + strand, within EX28DRAFT_3393at 61.292 kb on + strand, within EX28DRAFT_3393at 61.293 kb on - strand, within EX28DRAFT_3393at 61.293 kb on - strand, within EX28DRAFT_3393at 61.293 kb on - strand, within EX28DRAFT_3393at 61.382 kb on + strand, within EX28DRAFT_3393at 61.389 kb on + strand, within EX28DRAFT_3393at 61.389 kb on + strand, within EX28DRAFT_3393at 61.604 kb on + strand, within EX28DRAFT_3393at 61.650 kb on - strand, within EX28DRAFT_3393at 61.682 kb on + strand, within EX28DRAFT_3393at 61.896 kb on - strand, within EX28DRAFT_3393at 61.975 kb on + strand, within EX28DRAFT_3393at 61.975 kb on + strand, within EX28DRAFT_3393at 62.148 kb on + strandat 62.148 kb on + strandat 62.149 kb on - strandat 62.205 kb on + strandat 62.206 kb on - strandat 62.418 kb on + strand, within EX28DRAFT_3394at 62.419 kb on - strand, within EX28DRAFT_3394at 62.419 kb on - strand, within EX28DRAFT_3394at 62.420 kb on + strand, within EX28DRAFT_3394at 62.421 kb on - strand, within EX28DRAFT_3394at 62.421 kb on - strand, within EX28DRAFT_3394at 62.421 kb on - strand, within EX28DRAFT_3394at 62.735 kb on + strand, within EX28DRAFT_3394at 62.736 kb on - strand, within EX28DRAFT_3394at 62.863 kb on + strand, within EX28DRAFT_3394at 62.864 kb on - strand, within EX28DRAFT_3394at 62.916 kb on - strand, within EX28DRAFT_3394at 62.916 kb on - strand, within EX28DRAFT_3394at 62.970 kb on + strand, within EX28DRAFT_3394at 62.970 kb on + strand, within EX28DRAFT_3394at 63.017 kb on + strand, within EX28DRAFT_3394at 63.018 kb on - strand, within EX28DRAFT_3394at 63.020 kb on + strand, within EX28DRAFT_3394at 63.021 kb on - strand, within EX28DRAFT_3394at 63.021 kb on - strand, within EX28DRAFT_3394at 63.021 kb on - strand, within EX28DRAFT_3394at 63.024 kb on + strand, within EX28DRAFT_3394at 63.025 kb on - strand, within EX28DRAFT_3394at 63.025 kb on - strand, within EX28DRAFT_3394at 63.160 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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59,663 + +0.9
59,723 - EX28DRAFT_3392 0.11 +0.5
59,742 + EX28DRAFT_3392 0.14 -2.3
59,743 - EX28DRAFT_3392 0.14 +0.9
59,891 + EX28DRAFT_3392 0.36 -0.5
59,892 - EX28DRAFT_3392 0.36 -0.4
59,927 - EX28DRAFT_3392 0.42 +0.1
59,927 - EX28DRAFT_3392 0.42 +0.5
59,961 + EX28DRAFT_3392 0.47 -0.4
60,062 - EX28DRAFT_3392 0.62 +0.7
60,241 - EX28DRAFT_3392 0.89 +0.0
60,241 - EX28DRAFT_3392 0.89 -0.4
60,314 - -0.8
60,335 - -0.2
60,374 + +0.6
60,375 - -0.7
60,375 - -0.6
60,375 - +0.9
60,451 + -3.6
60,451 + +0.9
60,452 - +0.3
60,452 - +0.2
60,452 - +0.7
60,484 - +0.6
60,484 - +0.7
60,516 + -1.1
60,518 + -0.3
60,519 - +0.7
60,519 - +0.3
60,541 + -1.0
60,541 + -0.0
60,542 - -0.3
60,542 - +1.3
60,542 - +1.5
60,542 - -0.0
60,543 + -0.0
60,543 + +0.2
60,544 - -0.1
60,544 - +0.3
60,569 + -1.0
60,570 - +0.8
60,570 - +0.1
60,571 + -0.9
60,875 + EX28DRAFT_3393 0.19 +0.1
60,876 - EX28DRAFT_3393 0.19 +0.3
60,879 + EX28DRAFT_3393 0.19 -0.3
60,879 + EX28DRAFT_3393 0.19 -1.6
60,879 + EX28DRAFT_3393 0.19 -0.9
60,880 - EX28DRAFT_3393 0.20 -1.0
60,880 - EX28DRAFT_3393 0.20 -0.5
60,880 - EX28DRAFT_3393 0.20 +0.2
60,880 - EX28DRAFT_3393 0.20 -0.1
60,880 - EX28DRAFT_3393 0.20 +1.2
60,880 - EX28DRAFT_3393 0.20 +0.5
60,880 - EX28DRAFT_3393 0.20 -0.2
60,882 + EX28DRAFT_3393 0.20 -1.5
60,882 + EX28DRAFT_3393 0.20 +0.4
60,882 + EX28DRAFT_3393 0.20 -0.2
60,882 + EX28DRAFT_3393 0.20 -0.5
60,882 + EX28DRAFT_3393 0.20 +0.5
60,882 + EX28DRAFT_3393 0.20 +0.2
60,883 - EX28DRAFT_3393 0.20 +0.1
61,007 + EX28DRAFT_3393 0.27 -0.2
61,123 - EX28DRAFT_3393 0.34 -0.5
61,178 + EX28DRAFT_3393 0.38 -0.6
61,292 + EX28DRAFT_3393 0.44 +0.1
61,292 + EX28DRAFT_3393 0.44 -0.5
61,293 - EX28DRAFT_3393 0.45 -0.0
61,293 - EX28DRAFT_3393 0.45 -0.9
61,293 - EX28DRAFT_3393 0.45 +1.0
61,382 + EX28DRAFT_3393 0.50 +0.1
61,389 + EX28DRAFT_3393 0.50 -1.1
61,389 + EX28DRAFT_3393 0.50 -0.2
61,604 + EX28DRAFT_3393 0.63 +0.7
61,650 - EX28DRAFT_3393 0.66 +0.2
61,682 + EX28DRAFT_3393 0.68 +0.1
61,896 - EX28DRAFT_3393 0.81 -1.8
61,975 + EX28DRAFT_3393 0.86 +0.1
61,975 + EX28DRAFT_3393 0.86 +0.0
62,148 + -0.2
62,148 + -0.1
62,149 - -0.2
62,205 + +0.4
62,206 - +0.2
62,418 + EX28DRAFT_3394 0.14 +0.3
62,419 - EX28DRAFT_3394 0.14 -0.1
62,419 - EX28DRAFT_3394 0.14 -0.7
62,420 + EX28DRAFT_3394 0.14 -0.0
62,421 - EX28DRAFT_3394 0.14 -0.6
62,421 - EX28DRAFT_3394 0.14 +1.9
62,421 - EX28DRAFT_3394 0.14 -1.3
62,735 + EX28DRAFT_3394 0.46 -1.2
62,736 - EX28DRAFT_3394 0.46 +0.0
62,863 + EX28DRAFT_3394 0.60 -0.6
62,864 - EX28DRAFT_3394 0.60 -0.2
62,916 - EX28DRAFT_3394 0.65 +0.0
62,916 - EX28DRAFT_3394 0.65 +0.5
62,970 + EX28DRAFT_3394 0.71 -0.2
62,970 + EX28DRAFT_3394 0.71 -0.1
63,017 + EX28DRAFT_3394 0.76 -0.3
63,018 - EX28DRAFT_3394 0.76 -0.4
63,020 + EX28DRAFT_3394 0.76 -0.7
63,021 - EX28DRAFT_3394 0.76 +0.6
63,021 - EX28DRAFT_3394 0.76 -0.4
63,021 - EX28DRAFT_3394 0.76 -0.1
63,024 + EX28DRAFT_3394 0.76 -0.1
63,025 - EX28DRAFT_3394 0.76 -0.4
63,025 - EX28DRAFT_3394 0.76 -0.3
63,160 + -0.0

Or see this region's nucleotide sequence