Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2915

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2913 and EX28DRAFT_2914 overlap by 40 nucleotidesEX28DRAFT_2914 and EX28DRAFT_2915 are separated by 220 nucleotidesEX28DRAFT_2915 and EX28DRAFT_2916 overlap by 31 nucleotides EX28DRAFT_2913: EX28DRAFT_2913 - Transcriptional regulators, at 223,711 to 224,727 _2913 EX28DRAFT_2914: EX28DRAFT_2914 - Acetyltransferase (GNAT) family, at 224,688 to 225,173 _2914 EX28DRAFT_2915: EX28DRAFT_2915 - Transcriptional regulators, at 225,394 to 226,431 _2915 EX28DRAFT_2916: EX28DRAFT_2916 - diaminopimelate decarboxylase, at 226,401 to 227,663 _2916 Position (kb) 225 226 227Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 224.440 kb on + strand, within EX28DRAFT_2913at 224.776 kb on + strand, within EX28DRAFT_2914at 224.776 kb on + strand, within EX28DRAFT_2914at 224.777 kb on - strand, within EX28DRAFT_2914at 224.777 kb on - strand, within EX28DRAFT_2914at 224.859 kb on - strand, within EX28DRAFT_2914at 224.917 kb on + strand, within EX28DRAFT_2914at 224.918 kb on - strand, within EX28DRAFT_2914at 224.918 kb on - strand, within EX28DRAFT_2914at 225.057 kb on - strand, within EX28DRAFT_2914at 225.146 kb on - strandat 225.196 kb on + strandat 225.197 kb on - strandat 225.197 kb on - strandat 225.233 kb on + strandat 225.252 kb on + strandat 225.253 kb on - strandat 225.262 kb on + strandat 225.336 kb on + strandat 225.357 kb on + strandat 225.372 kb on + strandat 225.373 kb on - strandat 225.390 kb on + strandat 225.391 kb on - strandat 225.391 kb on - strandat 225.391 kb on - strandat 225.486 kb on + strandat 225.610 kb on + strand, within EX28DRAFT_2915at 225.611 kb on - strand, within EX28DRAFT_2915at 225.758 kb on - strand, within EX28DRAFT_2915at 225.767 kb on - strand, within EX28DRAFT_2915at 225.904 kb on + strand, within EX28DRAFT_2915at 225.905 kb on - strand, within EX28DRAFT_2915at 225.940 kb on - strand, within EX28DRAFT_2915at 225.993 kb on + strand, within EX28DRAFT_2915at 226.069 kb on + strand, within EX28DRAFT_2915at 226.076 kb on + strand, within EX28DRAFT_2915at 226.076 kb on + strand, within EX28DRAFT_2915at 226.077 kb on - strand, within EX28DRAFT_2915at 226.195 kb on - strand, within EX28DRAFT_2915at 226.261 kb on + strand, within EX28DRAFT_2915at 226.278 kb on + strand, within EX28DRAFT_2915at 226.279 kb on - strand, within EX28DRAFT_2915at 226.279 kb on - strand, within EX28DRAFT_2915at 226.279 kb on - strand, within EX28DRAFT_2915at 226.394 kb on - strandat 226.508 kb on - strandat 226.508 kb on - strandat 226.512 kb on - strandat 226.558 kb on + strand, within EX28DRAFT_2916at 226.713 kb on - strand, within EX28DRAFT_2916at 226.723 kb on + strand, within EX28DRAFT_2916at 226.732 kb on + strand, within EX28DRAFT_2916at 227.072 kb on - strand, within EX28DRAFT_2916at 227.096 kb on + strand, within EX28DRAFT_2916at 227.131 kb on - strand, within EX28DRAFT_2916at 227.153 kb on + strand, within EX28DRAFT_2916at 227.154 kb on - strand, within EX28DRAFT_2916at 227.154 kb on - strand, within EX28DRAFT_2916at 227.288 kb on + strand, within EX28DRAFT_2916at 227.289 kb on - strand, within EX28DRAFT_2916at 227.292 kb on + strand, within EX28DRAFT_2916at 227.293 kb on - strand, within EX28DRAFT_2916

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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224,440 + EX28DRAFT_2913 0.72 +1.1
224,776 + EX28DRAFT_2914 0.18 -0.2
224,776 + EX28DRAFT_2914 0.18 -0.3
224,777 - EX28DRAFT_2914 0.18 +0.0
224,777 - EX28DRAFT_2914 0.18 +0.6
224,859 - EX28DRAFT_2914 0.35 +0.7
224,917 + EX28DRAFT_2914 0.47 +1.2
224,918 - EX28DRAFT_2914 0.47 +0.0
224,918 - EX28DRAFT_2914 0.47 -0.8
225,057 - EX28DRAFT_2914 0.76 -0.5
225,146 - -0.0
225,196 + -0.6
225,197 - +0.0
225,197 - +0.1
225,233 + +1.0
225,252 + -0.2
225,253 - +0.3
225,262 + -0.1
225,336 + +0.6
225,357 + -1.4
225,372 + -0.3
225,373 - +0.4
225,390 + -0.4
225,391 - +0.5
225,391 - -3.4
225,391 - -2.3
225,486 + -0.4
225,610 + EX28DRAFT_2915 0.21 +0.1
225,611 - EX28DRAFT_2915 0.21 +0.7
225,758 - EX28DRAFT_2915 0.35 -0.2
225,767 - EX28DRAFT_2915 0.36 -2.0
225,904 + EX28DRAFT_2915 0.49 -0.4
225,905 - EX28DRAFT_2915 0.49 +0.6
225,940 - EX28DRAFT_2915 0.53 -0.2
225,993 + EX28DRAFT_2915 0.58 -2.1
226,069 + EX28DRAFT_2915 0.65 -0.3
226,076 + EX28DRAFT_2915 0.66 -0.5
226,076 + EX28DRAFT_2915 0.66 +0.2
226,077 - EX28DRAFT_2915 0.66 -0.4
226,195 - EX28DRAFT_2915 0.77 -0.2
226,261 + EX28DRAFT_2915 0.84 -0.2
226,278 + EX28DRAFT_2915 0.85 -0.1
226,279 - EX28DRAFT_2915 0.85 -0.3
226,279 - EX28DRAFT_2915 0.85 -0.3
226,279 - EX28DRAFT_2915 0.85 +0.4
226,394 - +0.4
226,508 - -1.4
226,508 - -1.1
226,512 - +2.2
226,558 + EX28DRAFT_2916 0.12 -1.4
226,713 - EX28DRAFT_2916 0.25 -4.4
226,723 + EX28DRAFT_2916 0.25 +0.1
226,732 + EX28DRAFT_2916 0.26 -1.5
227,072 - EX28DRAFT_2916 0.53 -1.4
227,096 + EX28DRAFT_2916 0.55 -5.4
227,131 - EX28DRAFT_2916 0.58 -3.0
227,153 + EX28DRAFT_2916 0.60 -1.9
227,154 - EX28DRAFT_2916 0.60 -3.0
227,154 - EX28DRAFT_2916 0.60 -4.7
227,288 + EX28DRAFT_2916 0.70 -2.9
227,289 - EX28DRAFT_2916 0.70 -3.5
227,292 + EX28DRAFT_2916 0.71 -2.4
227,293 - EX28DRAFT_2916 0.71 -1.8

Or see this region's nucleotide sequence